Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01843 ATGGAGCTCTCTGTGATTGCAAGAAACATGGAAGAAGTTGTCTTGTTGGTTGATGATTTGAAATCGCTTTCTGGGATTTCACGTTGTAGAATATGCCATGAAGAAGAATTCGAGAGCACGAAAACCTTGGAAGCTCCTTGTGCTTGTTCGGGGACAGTCAAGTTTGCTCACAGAGACTGCATTCAGACGTGGTGCAATGAGAAAGGAAACACAACTTGTGAAATATGTCTTCAGAAATACGAACCTGGATATACAGCGGTTCAGAAGAAATCGCAAATAGCTGATGCAGCAATGACCATTAGGGATAGCCTGCAAATTTCAATGAGTGAACAAGAACCGTTAAACGCAAGAATAGTTGAGGGAAACAATTACTCTGAATGCACATATGCTGCAGATAGAAGCGCGGCTTGTTGTCGATCCCTGGCTTTAGCTTTTACTCTTATCTTGCTTGTAAGACATCTTTTTGCACTGCTTACGAATGGAATGGAAGATTATCCCTTTACAATTCTTACGGTATTTTTACTGAGGGCCAGTGGAATTATTATACCGATGTACATAATCATTAAGACGATCGGAGCCATACATAATAATATCAAACGTTATCATCATCTTCATCAGGTTTTGAAATTTTCATGCATTTATATTTTTATTAATTACTATATTTTTTTCTTATGGGTAATGACTGGCTCTTCGATTATTACGATTGACATGCAATCACAACTAAAAAATGATTGTTGCTCTACTTATCAGGATTCTGATGATGAGTCCTCGATATCAGATGGAGATGAGGAAGAAAATGAGAGAGCAGATGATGCAATTTTAAGACATTCACAATGA 837 0.3787 MELSVIARNMEEVVLLVDDLKSLSGISRCRICHEEEFESTKTLEAPCACSGTVKFAHRDCIQTWCNEKGNTTCEICLQKYEPGYTAVQKKSQIADAAMTIRDSLQISMSEQEPLNARIVEGNNYSECTYAADRSAACCRSLALAFTLILLVRHLFALLTNGMEDYPFTILTVFLLRASGIIIPMYIIIKTIGAIHNNIKRYHHLHQVLKFSCIYIFINYYIFFLWVMTGSSIITIDMQSQLKNDCCSTYQDSDDESSISDGDEEENERADDAILRHSQ 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01843 278 Pfam RING-variant domain 29 76 IPR011016 GO:0008270
Vimu3g01843 278 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 26 198 IPR033275 -
Vimu3g01843 278 MobiDBLite consensus disorder prediction 248 278 - -
Vimu3g01843 278 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 87 IPR013083 -
Vimu3g01843 278 ProSiteProfiles Zinc finger RING-CH-type profile. 21 83 IPR011016 GO:0008270
Vimu3g01843 278 Pfam Protein of unknown function (DUF3675) 82 191 IPR022143 -
Vimu3g01843 278 FunFam E3 ubiquitin-protein ligase MARCH4 18 86 - -
Vimu3g01843 278 SMART ringv_2 28 77 IPR011016 GO:0008270
Vimu3g01843 278 SUPERFAMILY RING/U-box 28 81 - -
Vimu3g01843 278 ProSiteProfiles Zinc finger RING-type profile. 29 76 IPR001841 -
Vimu3g01843 278 CDD RING_CH-C4HC3_MARCH 29 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01843 Vimu-Chr3 33185549 33187783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01843 29 76 C3H Transcription Factor Family AT2G37950 44.898 5.23e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01843 - - gmx:100797029 376.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01843 3 33185549 33187783 Vimu3g01843 3 33185549 33187783 ECH
Vimu6g02063 6 18437986 18439941 Vimu3g01843 3 33185549 33187783 PCT