Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01836 ATGCCCGTTGATGCTTCTTCGGTTATGTATAGACCTCCCAAAGACTTGGATGGAATACCGGGTGCAAAAGATTTGATAATGTGCTTGACTGGTTATCTACGCCAGGATCGGGATGACATTATGACCATGGTCGGCCTGATGGGTGCGCAGTTTTCTAAACCATTGGTAGCAAACAAGGTTACTCATCTCATATGCTATAAATTTGAAGGAGAAAAGTATCTGCTTGCCAAGAGATTGGGCACAATAAAGCTAGTCAATCATCGTTGGTTGGAAGATTGCTTGAAGGAATGGGTGCTTCTTCCTGAAGACAGATATAGCAAGAGTGGTTACGAACTAGAAATGACGGAGGAAGAGGCCAAGGATTCTGAGGAAGAAGGTGAAGATTCTAAGCTGGGACAATCAGGTGGGAGAAATATACAACAAAGCCCCCTTGGTTCAAAATTTGGGCATGCTGGAACTCATGGATTGTTGAAATCAGTAAGAGAGGCATCGATCAACTTACCAGATTCTACCGGTCCACGGGTTTTGCCAAATGTCAATAATGGTGAAGACTCTTTAGCCATTCCAGGAAACAAGAGAAAATCTGATCAAGACTCTAGCTTTTATAATGTTGATGACTCAAGGATACGCTATCAGACTCCTGATATTTCTAAATTACCTGACAAATATACAAACATCACTGAGTCTAAGAATGCTGATTTTCCAAAGGCACTTGGCTGCCAGGACCCTGGCAATACTGCAAATACAAACTCATCTGTTCAGCAGTCCGGTCTGCATGGTAGCACTATGGAGTCTAAGAAGTTGATAAGTGAATTGACATCAACATCTGCAAGTGCAGCTGGAGTTGCACATTCAAATGAAAAGCTTGGAACCACAAGTTATTCTAGAAAGAACCAAAGGGAATTTTCTGTCCCAAGGATATTAGACGGAAGCTCAGGCATAGAAGGCAACAAATGTGAAAACAGTAAGGTTGACGAGGCAATTGGGTTTATGAAATCTACCAGTTTTGAAATTTCTGGGAGAGGAAATGATTTTACTAAAGAGGATGAACCAATTAGTTTATTGTCTGAAAAGAGGATAAATGAAGCTTCTTTTACGAAATTAAAATCAAGAAAGGTGTCCTCTGATGCAAAAGTCTCCATCCAATCAGCAAACGGTAAACCTCAAGGATTAAAAGTGACATCTAAGGTTGATGGGCCACCCAAAGCTGGTTCTAACTCCAACTCACTGGCATTTGATGAGCATTTCTCAAGAAATGCCAGCCCAGACTCTGCACAGTGTGATAGTGTCTATCAGAATAGTCCACAAACGGCTATTCGGAGCTTAAGTGAGTCTAAAATTAGTGGCAAGCCTGATGTCACAAGTTCTGGAATGCGACAAGTTGGTGGTAATGAAACCGGGCTGCATATCACCAAAAGTCTTGATTCTTCACCAAAGGGAAACAAAATCTCACATAATGTGGAATCCGGTGGTTGTACTAGCTTGGGTTTAAGGAATGAAGAATGTAATAAACTGGTTAGAAAATCACCCACAAAGAAGTCAGTTGTCAAGGGAATTTCGGGTTCTAAACCTAGAATAGGTGCCACTGCTACACATAAAAGGTCACTTTCCTTGAATAAAACTAACCTTGGTGAAGGTGTAGCTTTATGCAGCGAAAGCAAAGAGATTTGTGATGCGAAGATGCACCGGGGTTATCACCAAAACCGTGACAATAACAAAAAGATGGACCAAGACGCAGTAAATAAAAATACAAATGATGCTTCTGACAGAGCTGAGTTCTTGACGGATGAAACAGAGGCTCCAGATGATAAATATGAATTTGAGTTTGGAATGGCACTAAATGAAGAATCAGTCCAGGCTTTGGAAAAGCCTAATAGGGCAACAAAAGAGAAGTCAGAAGCAATTTGCCCCGCAACAAAATGTGAAGAAGAAAATCCTCCTAAGAAAGTCACAAATAAAGCAGAAATACAGAAAATGTCTTCGCTGTTAGTAAAGAATCAAGCAAGAGAATGTGCTTCTGGTAAAGCCAATGCCACAGTTAGTAAATACGCAGGCGATGCTGGTGACAGAACTGAGACTTTGGATGATGAAACCGAAGATCCAGATGACAAACTTAAAAATGAGTTAGGAATGGCACCTGAAGAAGAATTGGTTCATCCTTCAAAAAAACGAGATAAATCTACTAAGGTTCACCCTTCAAGAAAACGAGATAAATCTCTAAAAGAGAAGCCAGAAGCAATTTTTCCCGCACCAAAATGTGAAGAGGCAATGCCTCCTCAAGGTGTCACAAATAAAACCGAAAAACAGAAGCCATCTTCACTGTTAGTAAAGGTTCAAGTAAGGAAACGTCCTCCTGGTAAAGCCAAGGCCACAGTTGCCAAGGATTTATCGAAACCTAAAGTTGTAGTATCTACGGAGAAGATTCCTAATGAAACGAGGCATGAGGCAGAGATAGACACTGTGGAAGAAATGCCCTCTTCTGCTGATAAACATGACAAGTCGGCCTTAGCAAGAAATAAGTCAGAGACTTTAGCTGAAGAAGAGAAGGAGAATAGACCAATTGATTTAATGCAGGATCCTGTGAAGGGCAGAAGCAATGGCAATCCAACTAATAAATCTAATGTAAGGCGAACAGATATCAAGTCTACTAAAGTGGGGCCCATTCCATCTATATCAGAATCTAACACGAGAGTAAAAACTGAAGCGGCATATTTTATATTAAGCGGTCACAGTCTACAGAGAAAAGAGTTTCAGCAAGTACTCAAGCGCTTAGGTGGAAGGGTTTGCCGGCATTCTCACAATTGGTCATATCAGGCGACACACTTCATAGCTCCCGACCCATTACGCAGGACTGAGAAATTCTTTGCAGCGGCTGCATCAGGAAGGTGGATTCTGAAAACGGATTACCTAACTGCCAGCAGTCAGGAAGGAAGACTCTTGGCGGAGGAGCCGTATGAGTGGCACAGGAATGGTCTCAGTGAGGATGGAGCAATCAATATGGAGGCTCCGAGAAAGTGGCGGCTAGTTAAAGAAAAAACAGGTCATGGCGCCTTCTATGGAATGCGTATTGTTGTATACGGTGATTGCATTGCTCCGCCTTTGGATACTCTTAAACGTGTCATCAAAGCTGGCGATGGAACAATATTAGCCACTTCTCCTCCTTATACAAAATTCCTTGGTACAGAAGTCGACTATGCTGTAGTTAGCCCTGGCATGCCACGTGTTGATATCTGGGTCCAAGAGTTCTTAAAACATGAGATACCTTGTGTTGTAGCGGACTATTTGGTTGATTATGTTTGCAAGCCCGGGTACTCCCTCAAGAAGCATGTGTTATATGGCTCTCATGTTTGGGCAGAGAAATCGTTTGATAAACTTAAAAGCAGAGAAGAGATTGTAGCTCCTGAGGATTTCAGTAGTGATGATGATGATGATGATGATGATATAACTTGCCTAGTGTGTGGATCCCGCGACAGAGGAGATGTAATGCTGATTTGTGGTGATGAAAGTGGTTCTGTTGGGTGTGGAGTGGGTACCCACATCGATTGCTGCGATCCTCCACTAACACACGTCCCTGAGGACGACTGGTTTTGTTCAAAATGCAGTACCACCCGAAACTCCTCAAACAATCCCACTAAAAGGAAAAAGAATGTTTTATCATAA 3660 0.4208 MPVDASSVMYRPPKDLDGIPGAKDLIMCLTGYLRQDRDDIMTMVGLMGAQFSKPLVANKVTHLICYKFEGEKYLLAKRLGTIKLVNHRWLEDCLKEWVLLPEDRYSKSGYELEMTEEEAKDSEEEGEDSKLGQSGGRNIQQSPLGSKFGHAGTHGLLKSVREASINLPDSTGPRVLPNVNNGEDSLAIPGNKRKSDQDSSFYNVDDSRIRYQTPDISKLPDKYTNITESKNADFPKALGCQDPGNTANTNSSVQQSGLHGSTMESKKLISELTSTSASAAGVAHSNEKLGTTSYSRKNQREFSVPRILDGSSGIEGNKCENSKVDEAIGFMKSTSFEISGRGNDFTKEDEPISLLSEKRINEASFTKLKSRKVSSDAKVSIQSANGKPQGLKVTSKVDGPPKAGSNSNSLAFDEHFSRNASPDSAQCDSVYQNSPQTAIRSLSESKISGKPDVTSSGMRQVGGNETGLHITKSLDSSPKGNKISHNVESGGCTSLGLRNEECNKLVRKSPTKKSVVKGISGSKPRIGATATHKRSLSLNKTNLGEGVALCSESKEICDAKMHRGYHQNRDNNKKMDQDAVNKNTNDASDRAEFLTDETEAPDDKYEFEFGMALNEESVQALEKPNRATKEKSEAICPATKCEEENPPKKVTNKAEIQKMSSLLVKNQARECASGKANATVSKYAGDAGDRTETLDDETEDPDDKLKNELGMAPEEELVHPSKKRDKSTKVHPSRKRDKSLKEKPEAIFPAPKCEEAMPPQGVTNKTEKQKPSSLLVKVQVRKRPPGKAKATVAKDLSKPKVVVSTEKIPNETRHEAEIDTVEEMPSSADKHDKSALARNKSETLAEEEKENRPIDLMQDPVKGRSNGNPTNKSNVRRTDIKSTKVGPIPSISESNTRVKTEAAYFILSGHSLQRKEFQQVLKRLGGRVCRHSHNWSYQATHFIAPDPLRRTEKFFAAAASGRWILKTDYLTASSQEGRLLAEEPYEWHRNGLSEDGAINMEAPRKWRLVKEKTGHGAFYGMRIVVYGDCIAPPLDTLKRVIKAGDGTILATSPPYTKFLGTEVDYAVVSPGMPRVDIWVQEFLKHEIPCVVADYLVDYVCKPGYSLKKHVLYGSHVWAEKSFDKLKSREEIVAPEDFSSDDDDDDDDITCLVCGSRDRGDVMLICGDESGSVGCGVGTHIDCCDPPLTHVPEDDWFCSKCSTTRNSSNNPTKRKKNVLS 1219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01836 1219 SUPERFAMILY BRCT domain 20 106 IPR036420 -
Vimu3g01836 1219 CDD BRCT_TopBP1_rpt7 904 977 - -
Vimu3g01836 1219 Gene3D BRCT domain 897 1013 IPR036420 -
Vimu3g01836 1219 MobiDBLite consensus disorder prediction 703 723 - -
Vimu3g01836 1219 Pfam PHD-finger 1150 1201 IPR019787 -
Vimu3g01836 1219 Pfam BRCA1 C Terminus (BRCT) domain 907 972 IPR001357 -
Vimu3g01836 1219 ProSiteProfiles BRCT domain profile. 23 107 IPR001357 -
Vimu3g01836 1219 MobiDBLite consensus disorder prediction 670 775 - -
Vimu3g01836 1219 MobiDBLite consensus disorder prediction 735 749 - -
Vimu3g01836 1219 SUPERFAMILY FYVE/PHD zinc finger 1134 1205 IPR011011 -
Vimu3g01836 1219 MobiDBLite consensus disorder prediction 242 262 - -
Vimu3g01836 1219 MobiDBLite consensus disorder prediction 379 487 - -
Vimu3g01836 1219 Gene3D BRCT domain 1014 1110 IPR036420 -
Vimu3g01836 1219 Gene3D BRCT domain 14 135 IPR036420 -
Vimu3g01836 1219 Pfam twin BRCT domain 25 89 IPR001357 -
Vimu3g01836 1219 MobiDBLite consensus disorder prediction 822 857 - -
Vimu3g01836 1219 SMART BRCT_7 1015 1102 IPR001357 -
Vimu3g01836 1219 SMART BRCT_7 13 97 IPR001357 -
Vimu3g01836 1219 SMART BRCT_7 896 977 IPR001357 -
Vimu3g01836 1219 ProSiteProfiles Zinc finger PHD-type profile. 1147 1203 IPR019787 -
Vimu3g01836 1219 SMART PHD_3 1149 1201 IPR001965 -
Vimu3g01836 1219 MobiDBLite consensus disorder prediction 168 200 - -
Vimu3g01836 1219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1111 1216 IPR013083 -
Vimu3g01836 1219 MobiDBLite consensus disorder prediction 111 146 - -
Vimu3g01836 1219 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 1 1215 IPR044254 -
Vimu3g01836 1219 MobiDBLite consensus disorder prediction 241 262 - -
Vimu3g01836 1219 ProSiteProfiles BRCT domain profile. 905 987 IPR001357 -
Vimu3g01836 1219 MobiDBLite consensus disorder prediction 400 487 - -
Vimu3g01836 1219 SUPERFAMILY BRCT domain 906 990 IPR036420 -
Vimu3g01836 1219 MobiDBLite consensus disorder prediction 822 879 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01836 Vimu-Chr3 33069823 33076110 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01836 43 149 Core DNA Replication Machinery Family AT4G02110 65.421 2.97e-36 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vimu3g01836 BRCT 3.1e-07 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01836 K10728 - gmx:100799144 1687.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01836 3 33069823 33076110 Vimu3g01836 3 33069823 33076110 ECH