Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01828 ATGGGAAGAGCTCCTTGTTGTGAGAAAGTAGGGTTGAAGAAAGGAAGGTGGACATCAGAGGAAGATGAGATCTTGGCCAAATACATTCAGGCCAATGGAGAAGGTTCATGGAGGTCATTGCCTAAGAATGCAGGATTATTGAGGTGTGGCAAGAGTTGCAGACTGAGATGGATTAACTATCTGAGAGCTGACCTTAAAAGAGGAAACATTTCTGCTGAAGAGGAGAACACGATCGTCAAGTTGCACGCTTCTTTGGGTAACAGGTGGTCTTTGATAGCAAGTCATTTGCCAGGAAGAACAGACAACGAGATTAAGAATTACTGGAATTCTCACCTGAGCAGGAAAATTTACAGTTTCCCAAAGATGGAGAACCAACAAGGTGCAGGTGCAGGTGCAGTTGCAGGGGCGATTGATACACCTAAAGTGGTGTGTATTCCTCCCAAGCGAAAAGGTGGCAAAACAAGCCGTTGGGCAATGAAGAAGAACAAAACCTATATCCAAAATGCCGACAGAACCAAACAAAATTTGAATCAACGAAATATTACTGTTAGCATAGTTCCAAAGGCACCCAGTTCATGGACAGAGAGCAATGGTGTGTGGAATGGCATAAGGGAGTCTAAGGTGACGGAGGGTGACGTGGTAGAAGAGTTTAGAGAGGGTAGAAGGGTAGATGAAAAGTGTGAAAAGGAGAAAAGTAACGATGAGGAGATGTTAAAAGTGTGTGAAATTGAAGGCATTGATGAGGGGAGTGACATGTTGGAAAGTTGCTTGGCAGAAACATGTGGGGTTTGGGACATAAATGAGAAGGGAGAGAGTAATGATGTGGAAATGGTGCCTAGTGCTGATGCGTGTCCAAACAAAACATCGTCGTGTGATAGTAGCGTGAACGGTTATTCGTGTTCTTCTTCAGTGGCCCTGAGCTTGGATCAACACTGGGATTGGGAGAGCGTGATAGAGTTCAATGAGTCTCAACTCGCTTCTGACGATTTTAATCACAAAGATGAACTGCTGACATGGCTGTTGGAGGATGACATTTGGGAAAGTCATGACAACAAATTGGAACAGACAGATATAAATATACAAGACAACGTTGTTGATTGGCTTCTCTCTTGA 1113 0.4385 MGRAPCCEKVGLKKGRWTSEEDEILAKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNISAEEENTIVKLHASLGNRWSLIASHLPGRTDNEIKNYWNSHLSRKIYSFPKMENQQGAGAGAVAGAIDTPKVVCIPPKRKGGKTSRWAMKKNKTYIQNADRTKQNLNQRNITVSIVPKAPSSWTESNGVWNGIRESKVTEGDVVEEFREGRRVDEKCEKEKSNDEEMLKVCEIEGIDEGSDMLESCLAETCGVWDINEKGESNDVEMVPSADACPNKTSSCDSSVNGYSCSSSVALSLDQHWDWESVIEFNESQLASDDFNHKDELLTWLLEDDIWESHDNKLEQTDINIQDNVVDWLLS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01828 370 Gene3D - 11 67 - -
Vimu3g01828 370 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vimu3g01828 370 Gene3D - 71 116 - -
Vimu3g01828 370 CDD SANT 16 61 IPR001005 -
Vimu3g01828 370 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vimu3g01828 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vimu3g01828 370 SMART sant 66 114 IPR001005 -
Vimu3g01828 370 SMART sant 13 63 IPR001005 -
Vimu3g01828 370 FunFam Myb transcription factor 71 116 - -
Vimu3g01828 370 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vimu3g01828 370 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vimu3g01828 370 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 215 - -
Vimu3g01828 370 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vimu3g01828 370 FunFam MYB-related transcription factor 13 66 - -
Vimu3g01828 370 CDD SANT 71 112 IPR001005 -
Vimu3g01828 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01828 Vimu-Chr3 32996263 33001753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01828 1 160 MYB Transcription Factor Family AT2G47460 69.939 4.26e-74 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu3g01828 Myb_DNA-binding 6.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01828 K09422 - gmx:100814275 429.098