Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01818 ATGGCAAAAGCTAATGCGAAGAACAAGTCGACCGTCGCGCTCCACCCTCCTTACTTCCAGATGATCGCCGATGCAATAACGTCGTTGAAGGAACGCACGGGTTCGAGTCAGCCGGCGATAGCCAAGTTCGTCGAGGACAAGCACAGCAAAGTGCTTCCTACCAACTTCCGGAAACTTCTCTCCGTTCAGTTGAAAAGTTTGGTCAAATCGGAGAAGCTCTACAAGGTCAAGAACTCCTACAAACTTTCTTCTCCACAAACTGAGAAACCCAAAACCGCTCCGAAAGAGAAGAAGTTGACTGAGAAGACGAAGAGGCTGAGTCAGGTGAAGACGCCCGAAGCTTTGAAGAAGAAGAAAAAAGGCCCCAGCGCAAAGAAATATGTGGCGGCGGCGGCGGCCTCTGGAGGAGGTAAAGTGAAGCGTTTGAGTCAGGTGAAGACTCCCGAGGCCATGAAGAAGAAGCCCAATTTAACACCTGCCAAACGCAAGGGCACTCCCAAACCCTCGAGGGCCAACAGGAAAGCTAGGAAATGA 534 0.5112 MAKANAKNKSTVALHPPYFQMIADAITSLKERTGSSQPAIAKFVEDKHSKVLPTNFRKLLSVQLKSLVKSEKLYKVKNSYKLSSPQTEKPKTAPKEKKLTEKTKRLSQVKTPEALKKKKKGPSAKKYVAAAAASGGGKVKRLSQVKTPEAMKKKPNLTPAKRKGTPKPSRANRKARK 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01818 177 PRINTS Histone H5 signature 1 22 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vimu3g01818 177 PRINTS Histone H5 signature 107 121 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vimu3g01818 177 PRINTS Histone H5 signature 28 45 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vimu3g01818 177 PRINTS Histone H5 signature 159 177 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vimu3g01818 177 MobiDBLite consensus disorder prediction 90 118 - -
Vimu3g01818 177 CDD H15 15 94 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vimu3g01818 177 Gene3D - 11 98 IPR036388 -
Vimu3g01818 177 PANTHER HISTONE H1 6 168 - -
Vimu3g01818 177 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 14 84 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vimu3g01818 177 Pfam linker histone H1 and H5 family 15 82 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vimu3g01818 177 SUPERFAMILY "Winged helix" DNA-binding domain 15 96 IPR036390 -
Vimu3g01818 177 MobiDBLite consensus disorder prediction 78 177 - -
Vimu3g01818 177 SMART h15plus2 12 79 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01818 Vimu-Chr3 32858567 32859167 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01818 16 85 Single Myb Histone (SMH) Gene Family AT1G72740 37.143 4.88e-10 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01818 K11275 - gmx:100306187 204.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01818 3 32858567 32859167 Vimu3g01818 3 32858567 32859167 ECH