Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01802 ATGTGTGGCGGTGCCATCATCGCTGACTTCATACCCCGCCGTGGCCGTTCTGTCGCTGCCTCCGAACTCTGGCCAAACTCCTTCGGAAAGGACGATGATTTCGGCTTCGGTTACTCCCAAATCGCTAACCAACAACCTTCCACTGTCAAAACGGCTCAACCTCCCAAAGTTAGCGAGAAAGTTGACACTAAGCCAGTGAAAAGGCAGAGGAAGAATCTCTACAGAGGGATTCGGCAGCGCCCTTGGGGCAAATGGGCTGCGGAGATTCGCGATCCTAGAAAAGGGGTTCGTGTCTGGCTGGGTACCTTCAACACTGCGGAAGAAGCTGCAAGGGCCTATGATCGTGAAGCTCGAAAAATCCGCGGCAAAAAAGCTAAGGTGAATTTCCCTAACGAGGACGACGAATATTCCATTCAAGCTCGTAATCCAATTCCACCCCTTCCTTTCGCAACCCAAAAACCAACCCCATATCAGCAACAGTACCGTTGCGATCTCAATAATGCCCCCACAAATCTCAACTTCGAGTTTGGTTATGACCTGAACCACACTGGGGCATTTTCATCCCACGTGGACTCTGTCAACGCTGACTCGGTTGTCGCTTCCGGCGACGAAAATTCAGGGTTAGCGTCCGGTTCAGAGGGCGCTCATTCGACAAACGAGTTCATGGGGTCTAGTAGTCAGAAAGTGAACGGTTATTTCAACGGCACGGTGATTGAGAAGGAGAAAGAGATAGAGGTGATTGAAGCTGAAGAGGAAAAGAACAAATTGCAGGAGCTTTCAGAGGAACTGATGGCTTATGAGAATTACATGAAGTTTTATCAGATTCCGTACTATGATGGACAATCTATGCCACCGAATAATGTTCAGGAAAGTGTTGTCGGGGATCTCTGGAGTTTCGATTGA 903 0.4917 MCGGAIIADFIPRRGRSVAASELWPNSFGKDDDFGFGYSQIANQQPSTVKTAQPPKVSEKVDTKPVKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFPNEDDEYSIQARNPIPPLPFATQKPTPYQQQYRCDLNNAPTNLNFEFGYDLNHTGAFSSHVDSVNADSVVASGDENSGLASGSEGAHSTNEFMGSSSQKVNGYFNGTVIEKEKEIEVIEAEEEKNKLQELSEELMAYENYMKFYQIPYYDGQSMPPNNVQESVVGDLWSFD 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01802 300 FunFam Ethylene-responsive transcription factor 2 72 131 - -
Vimu3g01802 300 Gene3D AP2/ERF domain 73 131 IPR036955 GO:0003700|GO:0006355
Vimu3g01802 300 Pfam AP2 domain 74 122 IPR001471 GO:0003700|GO:0006355
Vimu3g01802 300 SMART rav1_2 73 136 IPR001471 GO:0003700|GO:0006355
Vimu3g01802 300 MobiDBLite consensus disorder prediction 203 223 - -
Vimu3g01802 300 Coils Coil 239 269 - -
Vimu3g01802 300 ProSiteProfiles AP2/ERF domain profile. 73 130 IPR001471 GO:0003700|GO:0006355
Vimu3g01802 300 CDD AP2 74 131 IPR001471 GO:0003700|GO:0006355
Vimu3g01802 300 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Vimu3g01802 300 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700|GO:0006355
Vimu3g01802 300 PANTHER DNA-BINDING DOMAIN 54 224 IPR044808 GO:0003700|GO:0009873
Vimu3g01802 300 SUPERFAMILY DNA-binding domain 73 131 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01802 Vimu-Chr3 32594253 32595239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01802 1 131 AP2-EREBP Transcription Factor Family AT3G16770 55.147 3.64e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vimu3g01802 AP2 8.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01802 K09286 - gmx:100819416 480.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01802 3 32594253 32595239 Vimu3g01802 3 32594253 32595239 ECH