Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01795 ATGAACAACTTCACACTTGCATCCATTTTGACTGTCATTTCTGCATTACTCTTCTTAGCAACTCATTTGACTAACACCCCAACAAGAGCCACACAGAAACATCTCCATTTCCAAAAGCACATACAAGTAGCTCAATCCACGTGCCAAGGAACACTCTACCCCGAACTATGTGTCTCAACCCTTGCCACATTCCCAGATCTTGCCTCCAAATCTGTCCCACAAGTCATTTCTTCTTTGGTCAACCATACCATGTACGAGGTAAAATCATCCTTCTACAACTGCAGCAGCCTCAAAAAGAAGATCAGAAACCTCAACCCACTTGATCAGAGAGCCCTCGACGACTGTCTCAAACTCTTCCAAGACACCAACCTGGAGCTCAAAACCACCATCGATGATCTCTCCACCAGCACCATCATTGGGTCCAAGCGCCACCATGACTTGCAGACTCTGCTCAGCGGAGCAATGACCAACTTATACACGTGCCTCGACGGCTTTGCTTACAGCAAGGGGCGCGTGAGAGACAGAATCGAGAAGAAGTTGCTTGAGATATCACATCATATGAGCAACTCCTTGGCCATGCTGAAGAAAGTTCCTGAAGTGAAGAAAACAACTTCGAAATCTGAGGTGTTCCCCGAATATGGAAAGATGAAAAAGGGTTTCCCCTCGTGGGTATCCCCCAATGACAGAAAGCTTCTCCAAGCGTCTGTGAATGAAACCAAGTTCGATCTCGTCGTTGCCAAAGATGGCACTGGCAATTTCACCACCATAGGGGAAGCACTTGCTGTTGCTCCCAACTCCAGCACAACCAGGTTTGTGATACACATAAAGGCGGGGGCGTATTTCGAGAATGTGGAAGTGATCAGGAAGCAGACGAATCTGATGTTTGTTGGAGACGGCATTGGGAAGACAGTAGTGAAAGGTAGTAGGAACGTTGTGGATGGATGGACAACTTTTCAATCAGCTACAGTTGCTGTTGTGGGAGAAGGATTCATAGCAAAGGGTATAACTTTTGAGAATTCAGCAGGGCCAGATAAACACCAAGCAGTGGCCCTAAGAAGTGGTGCTGACTTCTCGGCTTTTTTCCGTTGCAGTTTTGTGGGCTACCAAGACACACTTTATGTGCATTCCCTACGCCAATTCTATCGAGAATGTGACATTTATGGCACTGTAGACTTCATTTTTGGAAATGCAGCAGTGGTGTTCCAAAACTGCAACTTATACGCACGCAAACCAAACGAAAATCAGAAGAACTTGTTCACTGCGCAAGGCAGAGAGGACCCTAACCAAAACACTGGCATATCCATCTTGAACTGCAAGATTGCAGCTGCTTCAGATTTAATCCCTGTCAAATCTTCCTTCAAGAGCTACCTAGGTCGTCCATGGAAAACGTACTCAAGAACTGTTTATCTAAAATCTTACATGGAGGATCTGATTGACCCAGAAGGGTGGTTAGAATGGAATGAGACATTTGCATTGGATACACTGTATTATGGAGAGTACATGAATAAGGGTCCAGGTTCAAACACAAGTGCCAGAGTTACATGGCCAGGTTATAGGGTCATAAACAGCTCAACTGAGGCAACCCAATTCACAGTTGCTCAGTTTATTCAAGGCAATGACTGGTTGAACACCACAGGCATTCCATTCTTCTCTGGTTTGAGTTGA 1665 0.4553 MNNFTLASILTVISALLFLATHLTNTPTRATQKHLHFQKHIQVAQSTCQGTLYPELCVSTLATFPDLASKSVPQVISSLVNHTMYEVKSSFYNCSSLKKKIRNLNPLDQRALDDCLKLFQDTNLELKTTIDDLSTSTIIGSKRHHDLQTLLSGAMTNLYTCLDGFAYSKGRVRDRIEKKLLEISHHMSNSLAMLKKVPEVKKTTSKSEVFPEYGKMKKGFPSWVSPNDRKLLQASVNETKFDLVVAKDGTGNFTTIGEALAVAPNSSTTRFVIHIKAGAYFENVEVIRKQTNLMFVGDGIGKTVVKGSRNVVDGWTTFQSATVAVVGEGFIAKGITFENSAGPDKHQAVALRSGADFSAFFRCSFVGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNLYARKPNENQKNLFTAQGREDPNQNTGISILNCKIAAASDLIPVKSSFKSYLGRPWKTYSRTVYLKSYMEDLIDPEGWLEWNETFALDTLYYGEYMNKGPGSNTSARVTWPGYRVINSSTEATQFTVAQFIQGNDWLNTTGIPFFSGLS 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01795 554 Pfam Pectinesterase 242 539 IPR000070 GO:0030599|GO:0042545
Vimu3g01795 554 ProSitePatterns Pectinesterase signature 2. 386 395 IPR033131 -
Vimu3g01795 554 CDD PMEI-like_3 46 198 - -
Vimu3g01795 554 Pfam Plant invertase/pectin methylesterase inhibitor 45 193 IPR006501 GO:0004857
Vimu3g01795 554 FunFam Pectinesterase 236 553 - -
Vimu3g01795 554 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 45 197 IPR035513 -
Vimu3g01795 554 FunFam Pectinesterase 40 198 - -
Vimu3g01795 554 NCBIfam pectinesterase inhibitor domain 14 196 IPR006501 GO:0004857
Vimu3g01795 554 Gene3D Invertase/pectin methylesterase inhibitor family protein 42 198 IPR035513 -
Vimu3g01795 554 Gene3D - 236 553 IPR012334 -
Vimu3g01795 554 SUPERFAMILY Pectin lyase-like 240 552 IPR011050 -
Vimu3g01795 554 PANTHER PECTINESTERASE 14 543 - -
Vimu3g01795 554 SMART PMEI_2 39 193 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01795 Vimu-Chr3 32499473 32503146 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01795 68 549 Carbohydrate Esterase AT4G02320 55.152 0.0 564
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01795 K01051 - gmx:100802881 993.801