Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01794 ATGGCTCTTAAGAACATTTCTTTCCTCGTATTCTCTCTTTGCTATATGTTTTCCTTCTCTCTCTTGGCATCATTCTCCATCGCAGATACCAGTTCATCCTCCATTGTTCCACCTCAAACCATTTGCGGGTCCACCGTAGACCCTACTTACTGTAGCAAAATCGTGCTTGCCAATCAAAATGGGAACGTCTTCGACTATGGTCGCGTTTCTTTTCAAAAGTCCTTGTCCCAGACACGCAAGTTCTTTAACTTGGTGGGTTCGTATCTTCAAGGTAGCTTGTCTTTGTCTCAATACACAATTAGTGCTCTTGAAGACTGTCGATACCTTGCTGAGCAAAACTTTGAATACTTATCAAACATTTATGCCACTACTAGCAAAGCTAGCGCTGTTCTTCCAAGTTCTCAAGCTGAAGATTTTGGAAACTATCTCAGTGCCGTTTTGACTAACCAACAAACATGCTTAGAAGGTCTACAGAGTACAACTTCAGATGCAAGAGTGAAGAATGACCTGTTATCATCTCTCTCTGATGATTTGAAGCTTTACAGCGTTACGTTGGCTTTGTTTTTAAAGGGGTGGGTGCCTGAGAAGAAAATGATCACATCGTGGCCCCAAAATGGAAGACATTTGAATTTCAAAAATGGTCGCTTGCCATTGGTCATGTCAGATCGAGTACGTGCTATTTATGACTCTGCTAGACACCATGGTAGGAAACTACTAACCACTGATAATGGCGGAAGTGTTGCTGTTAGTGACATCGTGGTTGTTAGTCAAGATGGAAGCGGAAACTTTACCACTATCAACGATGCAATTGCTGCTGCACCAAACAACACAGTTGCTAGTGATGGATATTTCCTTGTTTTTATCACTGAGGGAGTGTACCAGGAATATGTATCCATTGCCAAAAGCAAGACGTATCTAATGCTTGTTGGAGATGGAATCAATCGGACAATCATCACGGGCAATCACAGTGTTGGGGATAATTTTACAACATTCAATTCAGCAACAGTAGCTGTTGTTGCTAAAGGGTTTGTAGCTGTTAACATAACCTTCCGTAACACTGCTGGAGCGAGCAAGGGTCAAGCAGTGGCACTAAGAAGTGGAGCAGATTTGTCAACATTCTATAGCTGCAGCTTTGAAGGGTATCAAGATACATTGTATACACATTCTATGAGGCAATTTTACCGAGAATGTGATATATATGGCACCGTTGACTTCATATTTGGAAATGCTGCCGTTGTTTTGCAAAACTGCAATATCTATCCTCGTCTCCCTCTGAGAGGACAATTCAACACGATCACGGCTCAAGGAAGAACTGATCCGAATCAAAACACAGGAACTTCCATACAGAATGCAACTATGAAAGCAGCTGATGATTTGGCTCCAGCCGTTGGCACCGTAGAAACCTACCTTGGGAGGCCATGGAAGGAATATTCAAGGACAGTTATCATGCAGTCTTTTATGGACAGTTTTATAAACCCTGCTGGTTGGCATGAATGGAATGGTGATTTTGCATTGAGCAGCTTGTACTATGCAGAATATAATAACACAGGACCTGCTTCTAACACTTCCAACCGAGTCACCTGGCCTGGTTATCACCTCATCAATGCCACAGATGCATCCAATTTCACCGTCTCTAACTTCTTGGCTGGGGATGATTGGATTCCCCAAACTGGGGTTCCATACTTAACTGGCTTGATATAG 1701 0.4262 MALKNISFLVFSLCYMFSFSLLASFSIADTSSSSIVPPQTICGSTVDPTYCSKIVLANQNGNVFDYGRVSFQKSLSQTRKFFNLVGSYLQGSLSLSQYTISALEDCRYLAEQNFEYLSNIYATTSKASAVLPSSQAEDFGNYLSAVLTNQQTCLEGLQSTTSDARVKNDLLSSLSDDLKLYSVTLALFLKGWVPEKKMITSWPQNGRHLNFKNGRLPLVMSDRVRAIYDSARHHGRKLLTTDNGGSVAVSDIVVVSQDGSGNFTTINDAIAAAPNNTVASDGYFLVFITEGVYQEYVSIAKSKTYLMLVGDGINRTIITGNHSVGDNFTTFNSATVAVVAKGFVAVNITFRNTAGASKGQAVALRSGADLSTFYSCSFEGYQDTLYTHSMRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLRGQFNTITAQGRTDPNQNTGTSIQNATMKAADDLAPAVGTVETYLGRPWKEYSRTVIMQSFMDSFINPAGWHEWNGDFALSSLYYAEYNNTGPASNTSNRVTWPGYHLINATDASNFTVSNFLAGDDWIPQTGVPYLTGLI 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01794 566 Gene3D - 250 566 IPR012334 -
Vimu3g01794 566 Pfam Plant invertase/pectin methylesterase inhibitor 39 187 IPR006501 GO:0004857
Vimu3g01794 566 Pfam Pectinesterase 253 551 IPR000070 GO:0030599|GO:0042545
Vimu3g01794 566 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 188 IPR035513 -
Vimu3g01794 566 FunFam Pectinesterase 246 565 - -
Vimu3g01794 566 SUPERFAMILY Pectin lyase-like 248 564 IPR011050 -
Vimu3g01794 566 PANTHER PECTINESTERASE 26 555 - -
Vimu3g01794 566 CDD PMEI-like_3 40 192 - -
Vimu3g01794 566 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 190 IPR035513 -
Vimu3g01794 566 ProSitePatterns Pectinesterase signature 2. 399 408 IPR033131 -
Vimu3g01794 566 SMART PMEI_2 33 187 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01794 Vimu-Chr3 32488818 32490776 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01794 8 566 Carbohydrate Esterase AT1G02810 57.192 0.0 645
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01794 K01051 - gmx:100786124 857.44