Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01793 ATGGCTAACAAATTACGTAATTCCCTCCAAAAAACAACAACATTTCTCATCCTCCTCGTACCCTTGTTATTCATCTCCCTGGTTTTCGCAGAAACCCCACCAACCACTACTGTATCTCCCATAACCATATGCAAATCCACCCCAGACCCATCTTATTGTAGTTCCGTCCTCCCTCCCCGAAACGCCAATGTTTACGACTATGGCCGTTTCTCAGTCAAAGAGTCTCTTTCTCAAGCAACCAAGTTCTTGAACTTGGTTAACAGATACCTCCAACGCCGTTCTTCTCTTTCAACCTCCGCAATCCACGCGCTCCAAGATTGCCAAACCCTCGCCGAACTCAACGTCGACTTTCTCTCCAGTTCCTTCCAAACAGTGAACCACACAACCACATTCCTTCCCACTTCGCGAGCTGACGACATCCAAACCCTTCTCAGCGCCATTCTAACCAACCAACAAACCTGCTTGGAAGGCCTCCAAGCCACAGCCTCCGCTTGGCGTGTCAGCAAGGGACTCTTCCTACCGCTTTCCAACGACACCAAGCTCTACACCGTCTCTCTCGCGCTCTTCACCAAGGGATGGGTCCCCACCAACGCTAACGTTACCGCATTTCACCCACCTGCCAAACACCGCGCCTTTCGAAATGGTCGTTTACCGCTCAAGATGTCCAGCAGAACGCGCGCGATCTACAACTCCGTGAGTCGGAGAAAGCTCCTCCAGGGGAATGTGGGTGACGAGGTGAAGGTGAAGGACATCGTTACTGTCAGCAAAGATGGTAGCGGGAACTTCACCACCTTGAACGACGCCATTGCGGCGGCGCCCAACAAGTCTTCCTCTACATCGGGGTACTTCCTCATCTACGTCACTGCGGGTGTTTATGAGGAAAATGTGTCCATTGATAAGAAAAAGACGTACCTGATGATGGTTGGAGATGGTATCAACAAGACAATTATTACAGGGAATCGAAGTGTTGTTGATGGCTGGACAACTTTCAAGTCCGCAACTTTTGCGGTGGTTGGAGCAGGATTTGTGGGTGTTAACATGACCATCCGCAACACTGCTGGAGCAGAGAAGCACCAAGCCGTAGCACTTCGTAACGGGGCAGATTTATCGACGTTTTACAGTTGCAGTTTTGAGGGGTACCAAGACACACTCTATGCGCATTCCCTGCGACAATTCTATAGGGAATGCGACATCTACGGCACCGTTGATTTCATATTCGGAAACGCGGCGACAGTTTTACAAAACTGTAACCTGTATCCTCGTCTTCCAATGAATGGCCAATTCAACGCCATAACCGCACAAGGCCGAACGGATCCCAACCAAAATACCGGAATTTGTATCCAAAATTGTACGATTAGAGCGGCCGATGATTTGGCAGCGAACATAGACGCAGCTGAAACTTATCTGGGAAGGCCTTGGAAAAATTACTCAAGAACGGTTTACATGCAGAGTTTTATGGACAGCGTGATCGATGCAGGTGGGTGGCGTGAATGGGACGGTGATTTTGCTTTGAACACTTTGTATTATGCAGAGTTTAACAACACTGGGCCTGGATCGACCACTGCAAACAGAGTCGCGTGGCCCGGTTACCACGTGATTAATGCAACCGATGCTGCTAATTTTACCGTCTCTAACTTCTTGCTCGGAGATAACTGGCTTCCCCAGACCACAGTGCCTTACGCAAGTAACTTCGTATAG 1698 0.4935 MANKLRNSLQKTTTFLILLVPLLFISLVFAETPPTTTVSPITICKSTPDPSYCSSVLPPRNANVYDYGRFSVKESLSQATKFLNLVNRYLQRRSSLSTSAIHALQDCQTLAELNVDFLSSSFQTVNHTTTFLPTSRADDIQTLLSAILTNQQTCLEGLQATASAWRVSKGLFLPLSNDTKLYTVSLALFTKGWVPTNANVTAFHPPAKHRAFRNGRLPLKMSSRTRAIYNSVSRRKLLQGNVGDEVKVKDIVTVSKDGSGNFTTLNDAIAAAPNKSSSTSGYFLIYVTAGVYEENVSIDKKKTYLMMVGDGINKTIITGNRSVVDGWTTFKSATFAVVGAGFVGVNMTIRNTAGAEKHQAVALRNGADLSTFYSCSFEGYQDTLYAHSLRQFYRECDIYGTVDFIFGNAATVLQNCNLYPRLPMNGQFNAITAQGRTDPNQNTGICIQNCTIRAADDLAANIDAAETYLGRPWKNYSRTVYMQSFMDSVIDAGGWREWDGDFALNTLYYAEFNNTGPGSTTANRVAWPGYHVINATDAANFTVSNFLLGDNWLPQTTVPYASNFV 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01793 565 Pfam Plant invertase/pectin methylesterase inhibitor 42 188 IPR006501 GO:0004857
Vimu3g01793 565 PANTHER PECTINESTERASE 25 556 - -
Vimu3g01793 565 NCBIfam pectinesterase inhibitor domain 16 162 IPR006501 GO:0004857
Vimu3g01793 565 Gene3D Invertase/pectin methylesterase inhibitor family protein 41 191 IPR035513 -
Vimu3g01793 565 ProSitePatterns Pectinesterase signature 2. 398 407 IPR033131 -
Vimu3g01793 565 FunFam Pectinesterase 245 564 - -
Vimu3g01793 565 Gene3D - 245 564 IPR012334 -
Vimu3g01793 565 FunFam Pectinesterase 41 191 - -
Vimu3g01793 565 SMART PMEI_2 35 188 IPR006501 GO:0004857
Vimu3g01793 565 Pfam Pectinesterase 252 550 IPR000070 GO:0030599|GO:0042545
Vimu3g01793 565 CDD PMEI-like_3 42 193 - -
Vimu3g01793 565 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 191 IPR035513 -
Vimu3g01793 565 SUPERFAMILY Pectin lyase-like 249 561 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01793 Vimu-Chr3 32478069 32479935 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01793 16 565 Carbohydrate Esterase AT4G02330 62.566 0.0 720
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01793 K01051 - gmx:100790729 958.747