Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01777 ATGAGCGGAGCAAAGGGGAAGAAGAAGGGAGCAAGCTTCGTGATCGATTGCGCGAAGCCGGTTGAAGACAAGATTATGGACATTGCTTCTCTCGAGAAGTTTCTTCAAGAGAGGATTAAGGTCGGCGGCAAGGCCGGTGCACTCGGCGATTCCGTTACTGTCACACGGGACAAGAGCAAGATCACCGTTACGTCTGACAGCAACTTCTCCAAAAGGTTCATTCTTCTTTTTCTTTTTCTTTCTAATGTCCTATTCATCATGCTGCCTTGTATGCGTTTTCTTTCGTTGGAGTGGATTTTTAACCCGCCATAG 312 0.4712 MSGAKGKKKGASFVIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTRDKSKITVTSDSNFSKRFILLFLFLSNVLFIMLPCMRFLSLEWIFNPP 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01777 103 Gene3D - 1 94 IPR038526 -
Vimu3g01777 103 PANTHER 60S RIBOSOMAL PROTEIN L22 3 74 IPR002671 GO:0003735|GO:0005840|GO:0006412
Vimu3g01777 103 FunFam 60S ribosomal protein L22-2 2 83 - -
Vimu3g01777 103 Pfam Ribosomal L22e protein family 9 74 IPR002671 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01777 Vimu-Chr3 32245426 32245737 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01777 4 72 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 85.507 9.61e-38 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01777 K02891 - gmx:100305544 137.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01777 3 32245426 32245737 Vimu3g01777 3 32245426 32245737 ECH
Vimu3g02066 3 35564344 35564929 Vimu3g01777 3 32245426 32245737 ECH