Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01771 ATGTCGTTTGCAGCTTCAACGTGGCTCACGTCCCTCTCGTGTTCATTGAATGCAACTCCAAATCTGCCTCACTGGCTGAGATTCATTTTCCTCTCTCCATGCCCACAGAGAGCTCTTTTTTCTGGTGTTGACGTTCTGCTTCTGTTGACCCTCTTTGTGTTTGCGCTTGTAAAGCTCTATTCTAGGCTCACTTCCAATGGCAACGCTAACTCACACCTTGATAAACCACTTATCAGAAACAACAGAGTTTCTGTCAGGACAACGGCATGGTTTAAGCTAACTCTAACTGCAACCACTCTTTTGACAATATTGTACGCGGTGGCTTGCATTCTAGTGTTTGTCAGTTCCACCGACGTGCCCTGGAAGCAAACTGATGGGTTGTTTTGGTTACTTCAGGCCATAACACAGCTAGTCCTTTTAGTCTTGATTGTCCATGAGAAAAGATTTGAAGCTGTTGCTCACCCTTTGTCTCTCAGAATATACTGGATTGCCAATTTCATTGTGGTTTCTCTGTTCACTGCTTCTGGGATCATACGTTTGGTCTCTGTGGGAGTGGAAGATGGGAAACACTTCAGCTTCATGGTTGATGATACGGTTTCTTTCATTTCTTTACCCTTGTCACTTTTTCTGCTCTGTGTTGCGTTTAAAGGGTTCACCGGGATTGTGTCCGGCGAAGAAACAGAACCCCTTATTGACGAGGAAACAAAATTACATGAGAAATCCAACGTTACTGGCTTTGCTTCAGCTTCTGCAATATCCAAGGCCTTTTGGATTTGGATAAACCCGTTGTTGAACAAAGGGTACAAGTCACCTTTGAAGATTGATGAAATTCCATACCTTTCAGCTCAGCATAGAGCTGAGAGGATGTCCGTTATCTTTGAATCAAAGTGGCCTAAATCAGATGAGAGGTCGGAGCACCCGGTTCGAACAACGTTGCTTCGGTGTTTCTGGAGGGATATAGCCTTGACAGCATTTCTTGCTGTTATTAGGCTATCTGTGATGTTCGTAGGGCCAGTTCTCATTCAAAGTTTTGTTGATTTTACAGCAGGAAAAGGTAGCTCTGTGTATGAAGGGTACTACCTCGTGTTGGTTCTCCTGTGTGCCAAATTTGTAGAAGTTTGGACAACTCACCATTTCAACTTCAACTCTCAGAAGCTTGGGATGCTTATCAGATGCACTCTCATCACTTCTTTGTACAAGAAGGGGCTCAGGCTAACGGGTTCCGCGAGGCAAGATCATGGTGTTGGGCCAATTGTCAATTACATGGCTGTTGATACCCAACAACTCTCTGATATGATGCTCCAGTTACACGCTGTGTGGATGATGCCATTTCAAGTTGGCATTGGTTTGTTTTTGCTCTACAATTGTCTGGGAGCGTCGGTGATTACGGCTACAATTGGACTTCTTGGTGTCATTGCATTTGCTGTGGTGGCTAATAGAAGAAACAAGCGTTTCCAGTTTAATGCCATGATGTGCCGTGACTCAAGGATGAAGGCAGTGAATGAGTTGCTTAATTACATGCGAGTCATCAAGTTCCAAGCATGGGAAGAACATTTCAATGGGAGAATTTTGGGTTTCCGAAAGTCTGAGTTTGAGTGGCTCTCCAAGTTTATGCAATCAATCTGTGGCGTTATTATTGTATTGTGGAGCACCCCATTGTTGATATCAACTCTGACGTTTGGTACCGCGCTTTTGCTTGGAGTTCGACTTGATGCAGGCACGGTTTTCACCACCACAACTGTGTTTAAGATCCTGCAGGAACCTATTAGGACCTTTCCTCAGAGTATGATATCTCTTTCACAAGCGCTGGTATCACTTGGGAGGTTAGATAGGTACATGTCTAGCAGGGAATTGTCGGATGATTTGGTTGAGAGAGAGGAAGGGTGTAGTGGACGCATTGCTGTGCAGGTCAGAGATGGAACCTTTAGCTGGGATGATGATGGTCAGCTGCAAGACTTGAAAAACATTAATTTGGAGATTAATAAGGGGGAGCTTACAGCAATTGTTGGGACTGTGGGGTCGGGGAAATCTTCACTCCTTGCTTCAATTCTTGGTGAGATGCACAAAAATTCTGGGAAGATTCAAGTTTGTGGGAGTACTGCTTATGTTGCTCAAACATCTTGGATTCAAAACGGGACCATTGAGGAAAACATTCTCTTTGGCTTACCAATGAACAGGCAGAAGTACAATGAAGTAGTCAGAGTTTGTAGCTTGGAGAAAGACTTGGAAATGATGGAGCATGGTGATCAGACAGAGATTGGAGAGCGTGGCATCAACCTAAGTGGGGGTCAGAAACAGCGCATACAGCTTGCCAGGGCTGTATATCAAGATTCTGATATATATCTTCTTGATGATGTTTTCAGTGCTGTAGATGCACATACTGGCACTGAAATATTCAAGGAATGTGTGAGGGGATCTCTTAAAGGAAAGACCATTATTCTTGTAACACACCAAGTAGACTTCCTACATAATGTGGATCTCATAGTGGTGATGAGGGATGGAGCGATAGTACAATCAGGGAAGTATGATGATCTACTTGCTTCTGGAATGGATTTTAGTGTTCTTGTTGCAGCACATGAGACATCTATGGAACTAGTGGAGCAAGGTGCGGTTGTGCCTGGGGAAAATCTGAATCAGCCAATAAAATCACCAAAGGCAGGTTCTAATAACAGAGAAGCCAATGGTGAAAGAAATTCTCTTGACCAGCCCAAGTCTGACAATGAAGGTTCTAAACTCATCAAAGAAGAGGAAAGAGAAACTGGGAAAGTTAGCTTTCGTATCTATAAACTCTACTGCACTGAGGCTTTTGGGTGGTGGGGCATTGGAGGAGTAATCCTTCTTTCTGTGTTGTGGCAAGCATCAATGATGGTGAGTGATTATTGGCTGGCTTATGAAACATCCGAAGAGCGTGCACAGTTCTTCAATCCTTCTGTGTTTATTTCTATCTACGGAATTATTGCTGTAGTTTCAATTATTTTGATTGTGTTAAGATCCTACGCTGTTATGGTCCTCGGGTTAAAGACAGCACAGATTTTCTTCACTCAAATTCTCCACAGCATCTTGCATGCCCCTATGTCTTTCTTTGACACCACTCCATCCGGGAGAATTCTAAGCAGGGCATCCACTGATCAGACCAATGTTGATGTCTTTATCCCCTTGTTCCTCAATTTTGTGATAGCCATGTACATTACAGTGATCAGCATCTTCATAATCACATGTCAAAATTCTTGGCCGACAGCTTTCTTGTTAGTTCCTCTTGCTTGGTTAAACATTTGGTACCGGGGTTATTTTCTTGCTTCCTCTCGTGAGTTAACTCGTCTGGATTCAATTACAAAAGCACCTGTCATTCACCATTTTTCTGAAAGCATTTCGGGGGTCATGACAATCCGGGCATTCAGAAAGCAGAAGCAGTTCTGCGTAGAAAATACTAAGCGGGTGAATTCTAATTTGCGAATGGATTTCCACAACTTCAGTTCCAATGCATGGTTGGGTTTCCGCTTAGAATTGCTTGGAAGCATAGTTTTTTGCTTCTCCGCCATGTTCATGATCATGTTACCCAGCAATATCATAAAGCCAGAGAATGTTGGCTTGTCGCTCTCATATGGGTTATCATTAAACGCCGTGATGTTCTGGGCCATATACATGAGCTGTTTCATTGAAAACAAATTGGTATCTGTTGAGAGGATCAAACAGTTCACAAATATTCCATCCGAAGCAACATGGAGAAACAAGGATCGTGTGCCTCCTGCAAATTGGCCCGGTCAAGGCAATGTTGATATCAAAGATTTGCAGGTTAGATATCGTCCAAACACCCCTTTGGTTCTTAAAGGCATCACCTTAAGCATCAATGGAGGAGAAAAAGTTGGTGTTGTTGGTCGAACAGGAAGTGGAAAATCAACTTTGATTCAAGTTTTCTTCAGGCTGGTGGAACCAACAGGAGGAAAAATAATAATTGACGGCATTGACATATCTACCTTGGGACTTCACGATCTTAGATCACGGTTTGGTATCATCCCTCAAGAGCCTGTCCTTTTTGAAGGAACAGTTCGAAGCAACATTGATCCAACTGGACAATATACAGACGAAGAGATATGGAAGAGTTTGGAACGCTGTCAGCTAAAAGAAGCAGTGGCTTCCAAGCCAGAGAAGCTTGACTCTTTAGTGGTTGATAATGGAGATAACTGGAGTGTGGGGCAGAGACAGTTGCTATGTTTGGGAAGGGTTATGCTTAAGCAAAGTAGGTTGTTGTTTATGGATGAGGCAACAGCTTCTGTTGATTCTCAAACCGATGCTGTGATACAAAAGATCATCCGAGAGGACTTTGCAGCACGTACCATCATCAGCATTGCTCATAGAATACCAACAGTAATGGACTGCGATAGAATTCTAGTTGTGGACGCAGGCATGAAACATATTCTTCTCTTTCTTCTTACTCTGTTACATCTCATAGATTACACTATTTGTAAGCTAAGGAGGGCCAAAGAATTCGACTCACCAGCCAACTTGGTCCAAAGGCCATCACTCTTTGTTGCTTTAGTTCAGGAGTATGCCAATCGCTCAAGTGGCCTATAA 4572 0.4322 MSFAASTWLTSLSCSLNATPNLPHWLRFIFLSPCPQRALFSGVDVLLLLTLFVFALVKLYSRLTSNGNANSHLDKPLIRNNRVSVRTTAWFKLTLTATTLLTILYAVACILVFVSSTDVPWKQTDGLFWLLQAITQLVLLVLIVHEKRFEAVAHPLSLRIYWIANFIVVSLFTASGIIRLVSVGVEDGKHFSFMVDDTVSFISLPLSLFLLCVAFKGFTGIVSGEETEPLIDEETKLHEKSNVTGFASASAISKAFWIWINPLLNKGYKSPLKIDEIPYLSAQHRAERMSVIFESKWPKSDERSEHPVRTTLLRCFWRDIALTAFLAVIRLSVMFVGPVLIQSFVDFTAGKGSSVYEGYYLVLVLLCAKFVEVWTTHHFNFNSQKLGMLIRCTLITSLYKKGLRLTGSARQDHGVGPIVNYMAVDTQQLSDMMLQLHAVWMMPFQVGIGLFLLYNCLGASVITATIGLLGVIAFAVVANRRNKRFQFNAMMCRDSRMKAVNELLNYMRVIKFQAWEEHFNGRILGFRKSEFEWLSKFMQSICGVIIVLWSTPLLISTLTFGTALLLGVRLDAGTVFTTTTVFKILQEPIRTFPQSMISLSQALVSLGRLDRYMSSRELSDDLVEREEGCSGRIAVQVRDGTFSWDDDGQLQDLKNINLEINKGELTAIVGTVGSGKSSLLASILGEMHKNSGKIQVCGSTAYVAQTSWIQNGTIEENILFGLPMNRQKYNEVVRVCSLEKDLEMMEHGDQTEIGERGINLSGGQKQRIQLARAVYQDSDIYLLDDVFSAVDAHTGTEIFKECVRGSLKGKTIILVTHQVDFLHNVDLIVVMRDGAIVQSGKYDDLLASGMDFSVLVAAHETSMELVEQGAVVPGENLNQPIKSPKAGSNNREANGERNSLDQPKSDNEGSKLIKEEERETGKVSFRIYKLYCTEAFGWWGIGGVILLSVLWQASMMVSDYWLAYETSEERAQFFNPSVFISIYGIIAVVSIILIVLRSYAVMVLGLKTAQIFFTQILHSILHAPMSFFDTTPSGRILSRASTDQTNVDVFIPLFLNFVIAMYITVISIFIITCQNSWPTAFLLVPLAWLNIWYRGYFLASSRELTRLDSITKAPVIHHFSESISGVMTIRAFRKQKQFCVENTKRVNSNLRMDFHNFSSNAWLGFRLELLGSIVFCFSAMFMIMLPSNIIKPENVGLSLSYGLSLNAVMFWAIYMSCFIENKLVSVERIKQFTNIPSEATWRNKDRVPPANWPGQGNVDIKDLQVRYRPNTPLVLKGITLSINGGEKVGVVGRTGSGKSTLIQVFFRLVEPTGGKIIIDGIDISTLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTGQYTDEEIWKSLERCQLKEAVASKPEKLDSLVVDNGDNWSVGQRQLLCLGRVMLKQSRLLFMDEATASVDSQTDAVIQKIIREDFAARTIISIAHRIPTVMDCDRILVVDAGMKHILLFLLTLLHLIDYTICKLRRAKEFDSPANLVQRPSLFVALVQEYANRSSGL 1523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01771 1523 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1258 1492 IPR003439 GO:0005524
Vimu3g01771 1523 Pfam ABC transporter 653 786 IPR003439 GO:0005524
Vimu3g01771 1523 Gene3D ABC transporter type 1, transmembrane domain 295 614 IPR036640 GO:0005524|GO:0016020
Vimu3g01771 1523 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 321 601 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu3g01771 1523 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 633 853 IPR027417 -
Vimu3g01771 1523 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 635 858 IPR003439 GO:0005524
Vimu3g01771 1523 FunFam ABC transporter C family member 5 904 1239 - -
Vimu3g01771 1523 MobiDBLite consensus disorder prediction 897 913 - -
Vimu3g01771 1523 FunFam ABC transporter C family member 10 304 617 - -
Vimu3g01771 1523 Pfam ABC transporter 1275 1423 IPR003439 GO:0005524
Vimu3g01771 1523 CDD ABC_6TM_ABCC_D2 944 1233 IPR044726 GO:0140359
Vimu3g01771 1523 SMART AAA_5 662 835 IPR003593 GO:0016887
Vimu3g01771 1523 SMART AAA_5 1284 1468 IPR003593 GO:0016887
Vimu3g01771 1523 MobiDBLite consensus disorder prediction 881 896 - -
Vimu3g01771 1523 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 943 1221 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu3g01771 1523 FunFam ABC transporter C family member 4 618 876 - -
Vimu3g01771 1523 CDD ABCC_MRP_domain1 635 834 - -
Vimu3g01771 1523 Gene3D ABC transporter type 1, transmembrane domain 904 1239 IPR036640 GO:0005524|GO:0016020
Vimu3g01771 1523 CDD ABCC_MRP_domain2 1256 1499 - -
Vimu3g01771 1523 Gene3D - 615 871 IPR027417 -
Vimu3g01771 1523 Pfam ABC transporter transmembrane region 945 1194 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu3g01771 1523 Pfam ABC transporter transmembrane region 322 588 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu3g01771 1523 MobiDBLite consensus disorder prediction 875 913 - -
Vimu3g01771 1523 SUPERFAMILY ABC transporter transmembrane region 312 614 IPR036640 GO:0005524|GO:0016020
Vimu3g01771 1523 ProSitePatterns ABC transporters family signature. 760 774 IPR017871 GO:0005524|GO:0016887
Vimu3g01771 1523 FunFam ABC transporter C family member 3 1241 1515 - -
Vimu3g01771 1523 SUPERFAMILY ABC transporter transmembrane region 928 1238 IPR036640 GO:0005524|GO:0016020
Vimu3g01771 1523 Gene3D - 1241 1473 IPR027417 -
Vimu3g01771 1523 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1251 1469 IPR027417 -
Vimu3g01771 1523 CDD ABC_6TM_ABCC_D1 322 609 IPR044746 GO:0140359
Vimu3g01771 1523 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 247 1516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01771 Vimu-Chr3 32087153 32094927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01771 632 851 Calmodulin-binding Proteins AT2G36910 30.508 2.87e-25 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01771 - K05666 gmx:100793361 2678.28