Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01769 ATGAAGTTCTGCAAGACCTACCAGCGTTACATTCAAGGGCATGGCCACAAGCTCCCTGCTGTTGGCTTCAAGAAGCTCAAAAAGACCATGAAAAGGTGCAGGAGAGTCTCCACACCCACCTGCCCCGATCATTGCCGAGTGTGCGATGGGACCTTTTTCCCTTCCCTTCTCAAAGAGATGTCAGAGATAGTAGGGTGCTTTAACCAGCGAGCGCAGAAATTGCTGGAAGTGCATCTTGCTTCTGGCTTCAGAAAGTACTTTCTCATGTTGAAAGGAAAATTTCATAGGAATCATACTGGTCTAATCCAAGAAGGCAAAGATCTAGTCATATATGCACTCATAAATGCCATTGCAATTCGAAAAATATTAAAGAAGTATGACAAGATTCATTATTCCAAGCAAGGTCAATTATTCAAGTCAAAAGTCCAGACCATGCACAAGGAAATTCTTCAGAGTCCTTGGCTTTCTGAGCTTATTGCCTTACACATTAACTTGAGGGAAACAAAAGCCAAGTCCAGGGAGGCATCTGCACTGTTTCATGGATGTTATCTCACATTCAAGGATGGAAAACCATCACTTACTTGTGAGCTCTTTGATTCCTTCAAAATTGACATTAACCTAACATGCTCCATATGCTTGGATACAGTGTTTGATCCAGTTTCTCTGGCGTGCGGCCACATTTTCTGCTACACCTGCGCTTGCTTAGCTGCGTCAGTTACCATTGTCGATGGACTTAAGGCAGCAAAGTCCAAAGCAAAATGTGCTCTATGCCGACAGCAAGGAGTTTACGAAGATGCTATGCACTTGGAAGAATTGAATATTCTGCTAGGTCGAAGGTGCAAAGAGTACTGGGAGCAAAGGCTTCGGATGGAGAGAAAAGAGAGGGTTAAGCAAGTGAAGGAGCACTGGGAAACGCAGTGTAAGATGTTCGTGGGCATCTAA 942 0.4406 MKFCKTYQRYIQGHGHKLPAVGFKKLKKTMKRCRRVSTPTCPDHCRVCDGTFFPSLLKEMSEIVGCFNQRAQKLLEVHLASGFRKYFLMLKGKFHRNHTGLIQEGKDLVIYALINAIAIRKILKKYDKIHYSKQGQLFKSKVQTMHKEILQSPWLSELIALHINLRETKAKSREASALFHGCYLTFKDGKPSLTCELFDSFKIDINLTCSICLDTVFDPVSLACGHIFCYTCACLAASVTIVDGLKAAKSKAKCALCRQQGVYEDAMHLEELNILLGRRCKEYWEQRLRMERKERVKQVKEHWETQCKMFVGI 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01769 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 311 IPR013083 -
Vimu3g01769 313 Pfam RING-type zinc-finger 209 241 IPR027370 -
Vimu3g01769 313 ProSiteProfiles Zinc finger RING-type profile. 209 258 IPR001841 -
Vimu3g01769 313 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 312 IPR033326 -
Vimu3g01769 313 SUPERFAMILY RING/U-box 201 261 - -
Vimu3g01769 313 ProSiteProfiles SPX domain profile. 1 140 IPR004331 -
Vimu3g01769 313 CDD SPX_BAH1-like 2 136 - -
Vimu3g01769 313 ProSitePatterns Zinc finger RING-type signature. 224 233 IPR017907 -
Vimu3g01769 313 SMART ring_2 209 257 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01769 Vimu-Chr3 32062309 32072392 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01769 K16275 - gmx:100803060 549.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01769 3 32062309 32072392 Vimu3g01769 3 32062309 32072392 ECH
Vimu3g01769 3 32062309 32072392 Vimu6g02129 6 18855903 18858347 PCT