Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01768 ATGGCAGGATCGTCAGAGAAGCAAGTGGTGGTGATCGGAATAGATGATAGTGAACAGAGCACGTACGCCCTCAAGTGGACCCTTGATCACTTCTTTCCGAGTCCAATCTTCAAGCTGGTTCTCGTTCACTCCAGACCCACCGCCACTTCTGCCGTGGGTCTCGCCGGACCTGGTGCCGCTGAGATATTGCCTATTGTAGATTCTGATTTGAGAAAGATTGCCGCCAGAGTCGTTGATTCCGCCAGACAACTTTGCATCGACAAATCTGTAGATGATGTCACAGCGGAGGTTGTGGAAGGTGATCCTAGAAATGTTCTTTGTGATGCTGTGGAAAAGTATCGTGCAGCAATATTGGTTGTGGGTAGTCACGGTTATGGAGCTATAAAAAGGGCTGTTTTAGGGAGTGTAAGTGACTATTGTGCTCATCATGCTCACTGCACGGTAATGATAGTGAAGAAGCCAAAAGTCAAACATTGA 477 0.4759 MAGSSEKQVVVIGIDDSEQSTYALKWTLDHFFPSPIFKLVLVHSRPTATSAVGLAGPGAAEILPIVDSDLRKIAARVVDSARQLCIDKSVDDVTAEVVEGDPRNVLCDAVEKYRAAILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKKPKVKH 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01768 158 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 5 158 - -
Vimu3g01768 158 CDD USP_Like 10 151 - -
Vimu3g01768 158 Pfam Universal stress protein family 9 152 IPR006016 -
Vimu3g01768 158 Gene3D HUPs 1 158 IPR014729 -
Vimu3g01768 158 PRINTS Universal stress protein signature 112 124 IPR006015 -
Vimu3g01768 158 PRINTS Universal stress protein signature 130 152 IPR006015 -
Vimu3g01768 158 PRINTS Universal stress protein signature 7 25 IPR006015 -
Vimu3g01768 158 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 10 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01768 Vimu-Chr3 32046285 32047337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01768 20 153 Plant U-box Gene Family AT5G57035 27.027 4.19e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01768 - - gmx:100527357 291.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01768 3 32046285 32047337 Vimu3g01768 3 32046285 32047337 ECH
Vimu3g01768 3 32046285 32047337 Vimu6g02128 6 18848261 18851416 PCT