Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01744 ATGGGTGACAACATCAACATTGGCAAAGTCTTAGACAGAGAATGCTTTAAGTACAACTTCACATCTTCAACTTCAACTTCAACTGCAATTGCAACTGCAAGTGACACCTCTGCACAAGATGGGGTCATCAAAGAGCAGGATCGGTTGCTTCCAATAGCTAATGTGGGCAGAATCATGAAGCAAACTCTTCCCCCTAATGCCAAGATCTCAAAAGAAGCAAAAGAAACCATGCAGGAATGTGTGTCTGAGTTCATCAGCTTTGTCACTGGGGAAGCTTCTGACAAGTGTCACAAGGAGAAGCGTAAAACCGTCAATGGTGACGATATTTGCTGGGCCTTGGCTACCCTAGGGTTTGATGACTACGCTGAGCCTCTTAAAAGGTACTTGCATAAGTATAGGGAGTTGGAGGGGGAAAGAGCTACCCAAAATAAGACTAACACTTATGAAAACAACCTTGCAAACATATAA 468 0.4338 MGDNINIGKVLDRECFKYNFTSSTSTSTAIATASDTSAQDGVIKEQDRLLPIANVGRIMKQTLPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLKRYLHKYRELEGERATQNKTNTYENNLANI 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01744 155 SUPERFAMILY Histone-fold 46 144 IPR009072 GO:0046982
Vimu3g01744 155 Coils Coil 125 145 - -
Vimu3g01744 155 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 49 113 IPR003958 -
Vimu3g01744 155 PRINTS CCAAT-binding transcription factor subunit A signature 115 133 - -
Vimu3g01744 155 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Vimu3g01744 155 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Vimu3g01744 155 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 30 143 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vimu3g01744 155 ProSitePatterns NF-YB/HAP3 subunit signature. 80 96 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vimu3g01744 155 FunFam Nuclear transcription factor Y subunit B-3 38 154 - -
Vimu3g01744 155 Gene3D Histone, subunit A 37 154 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01744 Vimu-Chr3 31726721 31727784 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01744 18 143 CCAAT-HAP3 Transcription Factor Family AT2G47810 68.939 4.85e-64 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vimu3g01744 CBFD_NFYB_HMF 6.5e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01744 K08065 - gmx:100817274 258.455