Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01742 ATGTCAAAAATTTCAGGTGATGAAGGAAGTTTCTCCTCAGCAAACACTGTGGAAGAAGTTCATGAAGAAAACGAGCAGCAACAGCCACAAAAGCGGCATGGCTCAAGTTCTGGGGCTTGCAACACCAATAGATCAAGTAATCAACAGCAGCAGCAGCAAGCAACCAAGAAGAAAAGAAACCTACCTGGAACCCCAGGCAAATATTCAAACCTCAGCTTCACTTTTTCCTTACTAGGCAGTCCTTGTAAATACGTTGAATTATGGTTGAACAGAAGTGATGAAGTTTATGAAACAGATCCGAATGCTGAAGTTATTGCTTTATCACCAACCACATTAATGGCAACAAATAGATTCGTTTGTGAGATCTGCAACAAAGGGTTTCAGAGGGACCAAAACCTTCAGTTGCACCGCAGAGGTCACAATCTTCCATGGAAACTGAGACAAAGAGCAAGCAACGAGGTGAAGAAAAGGGTTTATGTTTGCCCTGAGCCCTCATGCGTCCACCACAACCCAGCTCGAGCATTAGGAGACCTCACCGGCATAAAAAAGCATTACAGCAGAAAACATGGTGAAAAAAAGTGGAAATGTGACAAGTGCTCTAAAAGATATGCAGTCCAATCTGATTGGAAGGCCCACCACAAAACCTGTGGCACCAGGGAATACAAATGTGATTGTGGGACCATATTTGCCAGAAGAGACAGCTTTATCACACACAGGGCCTTTTGTGACGCATTAACCGAGGAGAACAACCGAGTAAACCCTTCATTAACGAGTGGCACTGGCATGGCACCAAGCTTGCAAAATGAATTGCAGGAGCTCATGGCCACAATGCCTCTAAGCACTAGTCCAAACAACGCAGTACCAGAATTCAACAACAACTATGAGTCTAGTAAGAGCCCACTCAAAAGCCTATCCCAAGAACATCTTGTCCCAATGCCATTTAAGTCCATGAGCATGAGGGGTTGCATGTCCTCTACCACTTCAGGTACACTCTTTGGTGGTCCAAAAAACATGTCACTCCCCTCATCTTCCACCCTTCAACTCAGCTCCAACAACTCTCATACTTTCAATTACTTCCAAGACAGCAAGAACTCTGCTGCATCAGCTCACATGTCTGCCACAGCTTTATTACAGAAAGCAGCCCAAATGGGTGCCGCTGCAAGCAATAATAGCATTAACTCTCCCACCATGATGCAGAAAAGCTTTGTTAGTGGCATCATTGGTCCTCACCCCAATCATAGTCCTTCTTCCTATGACCCCTTCCATCATCCGCACCCTGATGATCAATCTCACATGGCAGGGATCAGGGAAGCTGGAGCATTCACCAACCAATTTTTCCACAAGGGGCAACAAGAAATGTCAGCAATACTTGATTCCAACACCAGTGATATGGGAATCTTCGGTGCAATGTTCATGGGAAGTGAGCACAACCAAGGCGTGATGAAGAACGTGGAACAAGAGGTTGGTGCTAGTAGTTCAAGTTTCATTCGTAGAAGAGATGTATCAGAAGGAAATCCAACGGGGGCTTCAAGGTTTGGAGGTGGTGACATGACAACGATCCATGATTTCTTGGGCGTTGGGGGTGCAACTTCAAGAGCAGGGAGTTTGCATGAACCACAGAAACAACAACAGCAAAGTTTGGAGTTAGAAGCATTAACCCACCAGAGGTTACAGATGATTAATCACTTTCACCACCACCTTCCACATGGGGATTCTGCTATGGAGAAGTCCCTTTGGGACATTTAA 1746 0.4525 MSKISGDEGSFSSANTVEEVHEENEQQQPQKRHGSSSGACNTNRSSNQQQQQQATKKKRNLPGTPGKYSNLSFTFSLLGSPCKYVELWLNRSDEVYETDPNAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRASNEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHHKTCGTREYKCDCGTIFARRDSFITHRAFCDALTEENNRVNPSLTSGTGMAPSLQNELQELMATMPLSTSPNNAVPEFNNNYESSKSPLKSLSQEHLVPMPFKSMSMRGCMSSTTSGTLFGGPKNMSLPSSSTLQLSSNNSHTFNYFQDSKNSAASAHMSATALLQKAAQMGAAASNNSINSPTMMQKSFVSGIIGPHPNHSPSSYDPFHHPHPDDQSHMAGIREAGAFTNQFFHKGQQEMSAILDSNTSDMGIFGAMFMGSEHNQGVMKNVEQEVGASSSSFIRRRDVSEGNPTGASRFGGGDMTTIHDFLGVGGATSRAGSLHEPQKQQQQSLELEALTHQRLQMINHFHHHLPHGDSAMEKSLWDI 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01742 581 MobiDBLite consensus disorder prediction 1 17 - -
Vimu3g01742 581 Pfam Zinc finger, C2H2 type 118 140 IPR013087 -
Vimu3g01742 581 FunFam protein indeterminate-domain 5, chloroplastic-like 172 251 - -
Vimu3g01742 581 ProSitePatterns Zinc finger C2H2 type domain signature. 120 140 IPR013087 -
Vimu3g01742 581 Gene3D Classic Zinc Finger 97 163 - -
Vimu3g01742 581 ProSiteProfiles Zinc finger C2H2 type domain profile. 118 140 IPR013087 -
Vimu3g01742 581 SMART c2h2final6 159 189 IPR013087 -
Vimu3g01742 581 SMART c2h2final6 118 140 IPR013087 -
Vimu3g01742 581 SMART c2h2final6 194 214 IPR013087 -
Vimu3g01742 581 MobiDBLite consensus disorder prediction 1 65 - -
Vimu3g01742 581 FunFam protein indeterminate-domain 12-like 97 165 - -
Vimu3g01742 581 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 28 546 IPR031140 -
Vimu3g01742 581 SUPERFAMILY beta-beta-alpha zinc fingers 117 214 IPR036236 -
Vimu3g01742 581 MobiDBLite consensus disorder prediction 30 65 - -
Vimu3g01742 581 Gene3D Classic Zinc Finger 173 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01742 Vimu-Chr3 31679367 31682381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01742 56 392 IDZ Gene Family AT3G50700 50.704 2.15e-105 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu3g01742 zf-C2H2 0.006 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01742 - - gmx:100797943 756.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01742 3 31679367 31682381 Vimu3g01742 3 31679367 31682381 ECH
Vimu6g02533 6 22066261 22068206 Vimu3g01742 3 31679367 31682381 PCT