Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01738 ATGTTCGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTTGGTATATCTTGTAGATTCCATCATCCTCAACCTGCTGGCACGTCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCTTCAGTTCCTCTGCCTGAACAGTATGGAGGAGCTTCTTCAAGCTTGAGAGTGGCTAGGCCTCCTATGTTGCCTGGTTCATATGTTCAAGGGGCTTATGGTCCTGCACCTTTATCATCACCAACATCAGCTTTTGCAAGACCATATACTCCCCTTCCCTCTACCTCTGGCCCTTTAGGAAGCAGCCTGAAGGAACAATTATTTCCTGAAAGACCTGGTGAACCTGAATGCCAATACTATCTGAGAACAGGGGACTGTAAATTTGGATTAGGTTGTCGATATCACCATCCTCGGGATCATATTGTGGCACGGCCACTTCTTAACCCTGTTGGACTTCCTTTACGACCGGGTGTACAACCTTGCGCATTTTATTTGCAAAATGGACATTGCAAGTTTGGCTCGACGTGCAAATTTGACCATCCTCTGGGATCCATGAGATACAGTCCATCGGCATCTTCTCTCATTGATGTGCCAGTTACTCCATATCCAGTTGGTTCTTTGCTGTCTCAGCTGGCCCCTTCAACAACCTCTTCAGAGCTTCGGCCTGAACTGATGTCAGGGTCCAAAAAGGAATCCTTTTCGGCCAGAATACCTTCTGGAAACAGTTCTGGTACCACTGTGGGTTTAATATTTTCACAAGGTGGGTCTGTTTCCCTATCTGATGTGCAACTCTCAAGCCAGAGTTCTGCCTCTGCTAGCAGTAGCAGAAGCACCAGACAAAGTGGTGAGATACGTTGA 879 0.4676 MFGEKECSYYLKTGQCKFGISCRFHHPQPAGTSLPASAPQFYQQVQSPSVPLPEQYGGASSSLRVARPPMLPGSYVQGAYGPAPLSSPTSAFARPYTPLPSTSGPLGSSLKEQLFPERPGEPECQYYLRTGDCKFGLGCRYHHPRDHIVARPLLNPVGLPLRPGVQPCAFYLQNGHCKFGSTCKFDHPLGSMRYSPSASSLIDVPVTPYPVGSLLSQLAPSTTSSELRPELMSGSKKESFSARIPSGNSSGTTVGLIFSQGGSVSLSDVQLSSQSSASASSSRSTRQSGEIR 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01738 292 MobiDBLite consensus disorder prediction 218 249 - -
Vimu3g01738 292 ProSiteProfiles Zinc finger C3H1-type profile. 1 29 IPR000571 GO:0046872
Vimu3g01738 292 MobiDBLite consensus disorder prediction 269 292 - -
Vimu3g01738 292 SUPERFAMILY CCCH zinc finger 4 29 IPR036855 GO:0046872
Vimu3g01738 292 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 164 188 IPR000571 GO:0046872
Vimu3g01738 292 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 120 145 IPR000571 GO:0046872
Vimu3g01738 292 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 2 28 IPR000571 GO:0046872
Vimu3g01738 292 Gene3D - 2 45 - -
Vimu3g01738 292 Gene3D - 117 199 - -
Vimu3g01738 292 SUPERFAMILY CCCH zinc finger 164 193 IPR036855 GO:0046872
Vimu3g01738 292 PANTHER PROTEIN PHOSPHATASE RELATED 3 220 - -
Vimu3g01738 292 SUPERFAMILY CCCH zinc finger 123 146 IPR036855 GO:0046872
Vimu3g01738 292 MobiDBLite consensus disorder prediction 91 109 - -
Vimu3g01738 292 MobiDBLite consensus disorder prediction 91 114 - -
Vimu3g01738 292 ProSiteProfiles Zinc finger C3H1-type profile. 118 146 IPR000571 GO:0046872
Vimu3g01738 292 ProSiteProfiles Zinc finger C3H1-type profile. 162 190 IPR000571 GO:0046872
Vimu3g01738 292 SMART c3hfinal6 1 28 IPR000571 GO:0046872
Vimu3g01738 292 SMART c3hfinal6 162 189 IPR000571 GO:0046872
Vimu3g01738 292 SMART c3hfinal6 118 145 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01738 Vimu-Chr3 31622749 31626473 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01738 3 256 C2H2 Transcription Factor Family AT5G18550 44.371 3.46e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu3g01738 zf-CCCH 5.9e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01738 - - gmx:100812475 498.819