Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01737 ATGGACTTGTACGGTCGGGCCCCCGTCAGGAACGGATCCAACCCGGTCAACCAACCCGAATGGCCTTCACCGGGCATCGACACTGCTCTCGAAGGTCTTTCTCTATTCTCTTTTCGTCTGTTAGAATCCATGTGGCATTTAACCCTCGGTGGCGGCGAATCTTACCCGGAGCGGCCCGGCGTGCCCAATTGTGTTTATTACATGCGAACCGGTGTGTGCGGATACGGTAGCAGGTGTCGTTACAATCACCCTCGTGATCGTGCTGCGGTTGTTGCGGCGGTAAGAGCTACAGGGGAGTACCCTGAACGGGTGGGGGAACCTCCATGTCAGTATTATTTAAAGACTGGAACCTGTAAATTTGGAGCATCCTGTAAATTCCACCATCCAAAAAATGGAGGTGGATATTTAAGTCAAGCTCCACTAAATACTTACGGATACCCATTAAGGCCGGGTGAGAAAGAGTGCTCCTATTATTTAAAAACGGGGCAGTGCAAGTTTGGTGTTACCTGTAAATTCCATCATCCTCAACCTGCTGGCTCACCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCTACCGTTCCTGTGCCTGAACAGTATGCAGGAGCTTCGGCAAACTTGAGAGTGGCCAGGCCCCCTGTATTGTCTGGTTCCTATGTACAAGGGGCTTATGGTCCTGTACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCCTTATTCGGCACCTGTAAGTCCTGTGCTATCTCCTGGTGCTCAACCTGCTGTTGGGGCCACTTCTTTATACGGAGTGACCCAGTTGTCATCACCAACATCAGCTTTTGCTAGACCATATACTCCGCTGTCCTCTACTACTGGACCTTCAGGAAACATACTTAAGGATCAATTATTTCCTGAAAGACCCGGTGAACCTGAATGCCAATACTTTCTAAGAACGGGGGACTGTAAATTTGGATTAGCTTGTCGATATCATCATCCTCGGGACCATATTGTTGCACGGCCATTTCTTAGCCCAATTGGACTTCCTTTACGACCGGGCGTACAACCTTGCGCTTTTTATTTGCAAAACGGGCATTGCAAGTTTGGCTCCACATGCAAATTTGACCATCCTTTGGGATCTTTGAACTACAGTCCATCGGTATCTTCTTTCATTGATGTGCCAGTTACTCCATACCCGGTGGGGTCTTTGCTGTCTCAGCTGGCTCCTTCTACAACATCTTCAGAGCTTCGGCCTGAACTAATGTCCGGGTCCAAAAAGGAATCCCTTTCAGCCAGAATACCTTCTTCTGGTACTTCTGTCGGTCTAATTTTCTCACAAGGTGGTTCTATCTCGTTATCTGATGTGCAACTCTCAAGTCAGAGTTCTACCCCTCTTGGCAGTAGCAGAAGCAACAGACAAAGCGGTGAGATACGTTGA 1434 0.4861 MDLYGRAPVRNGSNPVNQPEWPSPGIDTALEGLSLFSFRLLESMWHLTLGGGESYPERPGVPNCVYYMRTGVCGYGSRCRYNHPRDRAAVVAAVRATGEYPERVGEPPCQYYLKTGTCKFGASCKFHHPKNGGGYLSQAPLNTYGYPLRPGEKECSYYLKTGQCKFGVTCKFHHPQPAGSPLPASAPQFYQQVQSPTVPVPEQYAGASANLRVARPPVLSGSYVQGAYGPVLLSPGVVQFPGWSPYSAPVSPVLSPGAQPAVGATSLYGVTQLSSPTSAFARPYTPLSSTTGPSGNILKDQLFPERPGEPECQYFLRTGDCKFGLACRYHHPRDHIVARPFLSPIGLPLRPGVQPCAFYLQNGHCKFGSTCKFDHPLGSLNYSPSVSSFIDVPVTPYPVGSLLSQLAPSTTSSELRPELMSGSKKESLSARIPSSGTSVGLIFSQGGSISLSDVQLSSQSSTPLGSSRSNRQSGEIR 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01737 477 SUPERFAMILY CCCH zinc finger 352 381 IPR036855 GO:0046872
Vimu3g01737 477 ProSiteProfiles Zinc finger C3H1-type profile. 350 378 IPR000571 GO:0046872
Vimu3g01737 477 MobiDBLite consensus disorder prediction 454 477 - -
Vimu3g01737 477 SMART c3hfinal6 149 176 IPR000571 GO:0046872
Vimu3g01737 477 SMART c3hfinal6 103 130 IPR000571 GO:0046872
Vimu3g01737 477 SMART c3hfinal6 306 333 IPR000571 GO:0046872
Vimu3g01737 477 SMART c3hfinal6 350 377 IPR000571 GO:0046872
Vimu3g01737 477 SMART c3hfinal6 58 85 IPR000571 GO:0046872
Vimu3g01737 477 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 151 176 IPR000571 GO:0046872
Vimu3g01737 477 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 60 85 IPR000571 GO:0046872
Vimu3g01737 477 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 308 333 IPR000571 GO:0046872
Vimu3g01737 477 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 352 376 IPR000571 GO:0046872
Vimu3g01737 477 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 106 130 IPR000571 GO:0046872
Vimu3g01737 477 ProSiteProfiles Zinc finger C3H1-type profile. 103 131 IPR000571 GO:0046872
Vimu3g01737 477 SUPERFAMILY CCCH zinc finger 311 334 IPR036855 GO:0046872
Vimu3g01737 477 FunFam Zinc finger nuclease 2 57 134 - -
Vimu3g01737 477 SUPERFAMILY CCCH zinc finger 106 131 IPR036855 GO:0046872
Vimu3g01737 477 PANTHER PROTEIN PHOSPHATASE RELATED 53 398 - -
Vimu3g01737 477 MobiDBLite consensus disorder prediction 413 435 - -
Vimu3g01737 477 ProSiteProfiles Zinc finger C3H1-type profile. 58 86 IPR000571 GO:0046872
Vimu3g01737 477 Gene3D - 54 132 - -
Vimu3g01737 477 Gene3D - 305 387 - -
Vimu3g01737 477 ProSiteProfiles Zinc finger C3H1-type profile. 306 334 IPR000571 GO:0046872
Vimu3g01737 477 SUPERFAMILY CCCH zinc finger 62 87 IPR036855 GO:0046872
Vimu3g01737 477 MobiDBLite consensus disorder prediction 1 23 - -
Vimu3g01737 477 Gene3D - 137 181 - -
Vimu3g01737 477 SUPERFAMILY CCCH zinc finger 151 177 IPR036855 GO:0046872
Vimu3g01737 477 ProSiteProfiles Zinc finger C3H1-type profile. 149 177 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01737 Vimu-Chr3 31615482 31620336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01737 1 450 C2H2 Transcription Factor Family AT5G18550 48.842 6.08e-128 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu3g01737 zf-CCCH 1e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01737 - - vun:114192085 932.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01737 3 31615482 31620336 Vimu3g01737 3 31615482 31620336 ECH