Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01730 ATGAATGCTTCTCCCAATCAAAAACAGAGAACATGCGACTATTGTGGGGACTTCACTGCTCTTCTTTATTGCAGAGCAGATTCTGCAAAGTTATGTTTCTTCTGTGACCGCAAAGTCCACTTCCCCAGCCAGCTTTTCTCCAAGCACTCTCGCACACAGCTCTGTGATGGGTGTGGCGATTCCCCTGCATCGGTCCTCTGTTATGCAGAGAACTCTGTTTTCTGCCACCACTGTGACTGCGAAAACCATAACAACCACTTCCTGTCTCAGCAACACCAACGGAGACCCCTTCGGGGGTTCTCTGGCTGCCCTTCTGTCCCTCAGATGTTAATGATTTTGGGTCTTACCGAAAAATCTCTGCTTTCAACTGAGGTAGGAAGTTCCCATCACCATGGCCTTTCCAATTTGCACGTGTGGAATGCTCCTTCTGTTTTTGGTCTTGAAGATTTCATTGCTTCCTCTTCTTCTTATAAGAATCGTAAGGGTGCGTGCGGGAGACAGAGAGAAGAAATTCTGAGTCAGCTTCGTGAACTAATAAAGTCGGAGCCTGACTTGATTCATGGAGAAGTAAATGCTGCTGAACCACAAACGCAATTTGAAAATTTGTCTACTGGATTTGAACGTGACATAGAGACTAATATGTTTCCTTCATATGAGGCAGGTGTGTTTTGTTGGCATGGAGAAAGCGGTGATCGTGCAAATCAAATTGTTCCTTCTTCTGATAATTCGGTGAGTGATTATAGCGAGCTAGTTTCGGCTAAAGATCCAAGCTTTACCATCCCTGTTGCAACTCACACCTATACTAACAACCAAGGAAAACCATCAAATTATTTTAAGCCTCATGAAAGAGATTCTGCATTATTGCGTTACAGAGAGAAGAAGAAAACAAGAAGGTATGACAAGCACATCAGATACGAATCACGAAAAGTTCGCGCAGAAAGCAGAATGAGAATTAAGGGTCGGTTTGTGAAAGATGAAACACAAAAATAA 990 0.4343 MNASPNQKQRTCDYCGDFTALLYCRADSAKLCFFCDRKVHFPSQLFSKHSRTQLCDGCGDSPASVLCYAENSVFCHHCDCENHNNHFLSQQHQRRPLRGFSGCPSVPQMLMILGLTEKSLLSTEVGSSHHHGLSNLHVWNAPSVFGLEDFIASSSSYKNRKGACGRQREEILSQLRELIKSEPDLIHGEVNAAEPQTQFENLSTGFERDIETNMFPSYEAGVFCWHGESGDRANQIVPSSDNSVSDYSELVSAKDPSFTIPVATHTYTNNQGKPSNYFKPHERDSALLRYREKKKTRRYDKHIRYESRKVRAESRMRIKGRFVKDETQK 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01730 329 SMART bboxneu5 7 54 IPR000315 GO:0008270
Vimu3g01730 329 SMART bboxneu5 55 97 IPR000315 GO:0008270
Vimu3g01730 329 ProSiteProfiles CCT domain profile. 283 325 IPR010402 GO:0005515
Vimu3g01730 329 Pfam CCT motif 283 325 IPR010402 GO:0005515
Vimu3g01730 329 CDD Bbox1_BBX-like 12 54 - -
Vimu3g01730 329 ProSiteProfiles Zinc finger B-box type profile. 7 54 IPR000315 GO:0008270
Vimu3g01730 329 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 11 325 - -
Vimu3g01730 329 CDD Bbox1_BBX-like 54 97 - -
Vimu3g01730 329 ProSiteProfiles Zinc finger B-box type profile. 50 97 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01730 Vimu-Chr3 31470678 31472447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01730 7 298 C2C2-CO-like Transcription Factor Family AT2G47890 35.873 1.36e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vimu3g01730 CCT 2.7e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01730 - - vun:114189938 542.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01730 3 31470678 31472447 Vimu3g01730 3 31470678 31472447 ECH
Vimu6g02173 6 19114727 19117593 Vimu3g01730 3 31470678 31472447 PCT