Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01727 ATGTTGACTTTGGTAGGAGTGACAGTGCTAAATGCTAAATTACTTGTTGATTCTGGAAAGAGACTGTGGGGAAGGTTTGTGGCGGAGATCAGAGACTCATTGAAGAAAGCTAGGGTTTGGTTGGGAACCTTCGATTCTGCTAAGGAAGCTGCTCAAGCCTATGACGCAACCACACGGACTCTCCGGGGTCCCAAGGCGAAAACAGATTTCCCTATTTCACACCCTTTTTGTCGTTCGACGATGCCGCTGTCAATGACAATCTTTGCTGCACCGCGCTATGCCTCTAAATGTGCTATGATGAATGTGAGAGGGAGAAACAAGATAGAGGAAGGAAAAGAGTGTTGTCTGGCCGGAGTGGATTTCTTTTACCGACAAGAGGCTGCTTCAGGCAATAACAGTGCCGGAGGGGAGAAGAAGGAAGGGTTTGGAAAACATCTGGCAAATATTTTAGAAAAAAAAGAGAAAAAACGTGGCACACACCTGGCTCACCGTTAG 495 0.4667 MLTLVGVTVLNAKLLVDSGKRLWGRFVAEIRDSLKKARVWLGTFDSAKEAAQAYDATTRTLRGPKAKTDFPISHPFCRSTMPLSMTIFAAPRYASKCAMMNVRGRNKIEEGKECCLAGVDFFYRQEAASGNNSAGGEKKEGFGKHLANILEKKEKKRGTHLAHR 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01727 164 Pfam AP2 domain 23 63 IPR001471 GO:0003700|GO:0006355
Vimu3g01727 164 CDD AP2 20 73 IPR001471 GO:0003700|GO:0006355
Vimu3g01727 164 Gene3D AP2/ERF domain 7 73 IPR036955 GO:0003700|GO:0006355
Vimu3g01727 164 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 20 107 - -
Vimu3g01727 164 SMART rav1_2 20 77 IPR001471 GO:0003700|GO:0006355
Vimu3g01727 164 SUPERFAMILY DNA-binding domain 21 73 IPR016177 GO:0003677
Vimu3g01727 164 ProSiteProfiles AP2/ERF domain profile. 3 71 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01727 Vimu-Chr3 31433755 31434594 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01727 20 88 AP2-EREBP Transcription Factor Family AT3G20310 63.768 3.93e-24 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu3g01727 AP2 1.5e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01727 K09286 - gmx:100803943 98.9821