Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01726 ATGTCGTTTAGGAGTATCATCGCGGAGAGGAAGGGATTTGAGTTTAAGTTTGGGTATAGTATGAGATCCAGGTCACAGTCACACAGTGATGCCATTGTCCAGGATCGTTTGGTGGTACTTGATGGGTTGAAGCAGAGTTGTTGGGCTAACATGCCCCCTGAGCTTTTGAGGGATGTGCTTATGAGGATTGAGGCTTCTGAGGATTCCTGGCCTGCCCGAAAACACGTCGTCGCCTGTGCCGGAGTGTGCCGCAGTTGGAGAGAAATCATGAAGGAAATTGTCAAATCCCCTCAAATATCTGGCAACTTGACATTTCCAATCTCCTTGAAGCAGCCTGGTCCAAGGGGCTCTCTTCTTCAGTGCTATATTAAACGAAATCACAGTAATAAAACATATTATCTGTTTCTTGGTTTAAACCAAGGCTGTACTGAATTAGCAGTACAATATTTAGTGAAGAGCTGGCCTTTTCTTTTCTTCTATAACCTTCCACGTTGTTGCTTTTGTGATGCTGATTTTTATAATCTTCCAGCCTCAACTGAGGATGGCAAGTTCCTTCTTTCTGCACGCAAGTGTCGACGTGCAACTCACACTGACTATATCATTTCTCTTAACTGTGATGATGTCTCAAGAGGGAGTAATACCTATATTGGGAAGCTGAGGTCAAACTTTTTGGGCACCAAATTCACTGTGTATGATGCACATCCTCCAATTTATGGAGCCAAAGTTACAAAGTCTCGTTCCACCAGGCTAGTCAGTCTGAAGCAAGTTTCTCCCAGACTTCCTGCTGGCAACTACCCCATTGCTCATGTCTCGTATGATCTGAATGTTTTGGGCTCTAGAGGCCCTAGAATAATGCACTGTGTTATGGATGCCATCCCTGCCTCAGCTGTTGAACCTGGAGGTGTGGCCCCAACACAGACTCAATTTCTTCATAGCAGAATTGATACTTCTCCATCCATCCCTTTCTTCAGATCAAAATCAACCCGCATGGATAGTCTCACGTCAGAACCTTTGACTTGTCAAGAGGAGGGGATGCTGGTACTGCAAAACAAGTCCCCCAGGTGGCATGAACAACTTCAATTCTGGTGTCTTAACTTCAACGGACGTGTGACAGTTGCTTCAGTTAAAAATTTCCAGCTGGTTGCTTCTCCAAAAAATGGAGTTTCTGAGCAGGCTCAGGAAAATGTTATTCTACAGTTTGGAAAAGTTGGTAAGGATGTATTCACCATGGATTATCAGTATCCAATCTCCGCCTTTGAAGCATTTGCAATATGCCTTAGCAGCTTTGACACCAAGATTGCTTGTGAATGA 1311 0.4424 MSFRSIIAERKGFEFKFGYSMRSRSQSHSDAIVQDRLVVLDGLKQSCWANMPPELLRDVLMRIEASEDSWPARKHVVACAGVCRSWREIMKEIVKSPQISGNLTFPISLKQPGPRGSLLQCYIKRNHSNKTYYLFLGLNQGCTELAVQYLVKSWPFLFFYNLPRCCFCDADFYNLPASTEDGKFLLSARKCRRATHTDYIISLNCDDVSRGSNTYIGKLRSNFLGTKFTVYDAHPPIYGAKVTKSRSTRLVSLKQVSPRLPAGNYPIAHVSYDLNVLGSRGPRIMHCVMDAIPASAVEPGGVAPTQTQFLHSRIDTSPSIPFFRSKSTRMDSLTSEPLTCQEEGMLVLQNKSPRWHEQLQFWCLNFNGRVTVASVKNFQLVASPKNGVSEQAQENVILQFGKVGKDVFTMDYQYPISAFEAFAICLSSFDTKIACE 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01726 436 CDD F-box_AtTLP-like 48 92 - -
Vimu3g01726 436 Pfam Tub family 173 431 IPR000007 -
Vimu3g01726 436 ProSitePatterns Tub family signature 2. 421 436 IPR018066 -
Vimu3g01726 436 Gene3D Tubby Protein; Chain A 108 430 IPR025659 -
Vimu3g01726 436 PRINTS Tubby superfamily signature 215 239 IPR000007 -
Vimu3g01726 436 PRINTS Tubby superfamily signature 199 215 IPR000007 -
Vimu3g01726 436 PRINTS Tubby superfamily signature 264 291 IPR000007 -
Vimu3g01726 436 PRINTS Tubby superfamily signature 393 412 IPR000007 -
Vimu3g01726 436 PRINTS Tubby superfamily signature 366 382 IPR000007 -
Vimu3g01726 436 PRINTS Tubby superfamily signature 414 436 IPR000007 -
Vimu3g01726 436 PRINTS Tubby superfamily signature 348 365 IPR000007 -
Vimu3g01726 436 PANTHER TUBBY-RELATED 28 434 - -
Vimu3g01726 436 SUPERFAMILY Tubby C-terminal domain-like 97 140 IPR025659 -
Vimu3g01726 436 Pfam F-box domain 48 94 IPR001810 GO:0005515
Vimu3g01726 436 SUPERFAMILY Tubby C-terminal domain-like 172 436 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01726 Vimu-Chr3 31395899 31398754 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01726 1 436 TUB Transcription Factor Family AT2G47900 67.713 0.0 589
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vimu3g01726 Tub 3e-95 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01726 K19600 - gmx:100809257 744.962