Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01719 TTGTGGCTGTCATTAATGGCGGAGGTCAAGGAAGAGAGTAAATCGAGTAGCGAGGAGAGTGTGAAGCTGTTTGTAGGTCAAGTGCCGAAGCGCATGACGGAGGATGAAGTGCTTGCAATGTTCAAGGAGTTCGCTTTGGTTGACGAGGTCAACATCATCAGAGACAAAGTTTCTCGTGCCTCCCGAGGATGCTGCTTTCTGATTTGTCCGTCCAGGGAAGAAGCGGATAAGGCGGTCAATGCCTGTCACAACAAGAAAACGCTGCCTGGGGCTTCCAGTCCGTTGCAAGTGAAGTATGCTGATGGCGAATTGGAAAGATTAGAACACAAACTCTTTATTGGCATGCTTCCAAAGAACATTTCTGAAGATGAGGTCTCGGATCTTTTCTCAAAGTATGGAAACATAAAGGATTTACAGATTTTAAGAGGTTCTCAGCAGACAAGTAAAGGGTGTGCATTTTTGAAGTATGAAACCAAAGAACAGGCCGTAGCTGCTCTTGAGGCAATCAATGGAAAGCATACAATGGAGGTTGGGGGAATCACTTTGGACCTTGAAGCAGCTTCTAGCGGCAAAATCCTGTCTGGTTCAGGTGTTCCTTTGGTTGTTAAATGGGCAGATACTGAAAAGGAAAGACAAGCTCGAAGGGCTCAAAAAGCACAGTCCCAAGTTTCTAACATGCCTCATGCTGATCCTCAACAACCCTCATTATATGGAGCCTTGCCAATGGGTTATGTTCCTCCATATAATGGATATGGTTATCAGGCTCCTGGCAGTTATGGGCTCGTGCCATACCGTTTTCCACCAATGCAGAATCAACCAGGTTTTCATAATATGAACATGAACCAAGTAAATGCAGTGAGGCCTGAACTTGGTCACAGTATGAACCCTAGAAATTATCCTGCGCCTCCTGCAAGTTACATGGGCTCATATCCTGCCATGCCAGGTATACAGCATCCAATGGTATATCCCAGAGGAATTGCAAGTCCGAGACCAGTGAGTAGTTCTCTTGGTTCTGTTTCACCTGCAGGTGGGAATAGCAACTATTCATCTTCAGGTGCCAGTAAAAGTTCCAATGGTCAGATTGAAGGACCACCCGGTGCCAATTTATTTATTTATCACATTCCTCAAGAATACGGAGATCAAGAGCTTGCAAATGCATTTCAGCAGTTTGGTAGAGTTTTGAGTGCTAAAATTTTTGTTGATAAAGCGACTGGCGTAAGCAAATGTTTTGGGTTTGTTAGTTACGATACTCCAGAAGCTGCCCAATCTGCCATTAGTATGATGAACGGTTGCCAATTAGGTGGTAAGAAATTAAAGGTTCAGCTCAAGAGGGATAACAAACAGAGTAAGCTTTACTGA 1359 0.4437 MWLSLMAEVKEESKSSSEESVKLFVGQVPKRMTEDEVLAMFKEFALVDEVNIIRDKVSRASRGCCFLICPSREEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNISEDEVSDLFSKYGNIKDLQILRGSQQTSKGCAFLKYETKEQAVAALEAINGKHTMEVGGITLDLEAASSGKILSGSGVPLVVKWADTEKERQARRAQKAQSQVSNMPHADPQQPSLYGALPMGYVPPYNGYGYQAPGSYGLVPYRFPPMQNQPGFHNMNMNQVNAVRPELGHSMNPRNYPAPPASYMGSYPAMPGIQHPMVYPRGIASPRPVSSSLGSVSPAGGNSNYSSSGASKSSNGQIEGPPGANLFIYHIPQEYGDQELANAFQQFGRVLSAKIFVDKATGVSKCFGFVSYDTPEAAQSAISMMNGCQLGGKKLKVQLKRDNKQSKLY 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01719 452 MobiDBLite consensus disorder prediction 209 232 - -
Vimu3g01719 452 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 173 IPR000504 GO:0003723
Vimu3g01719 452 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 369 439 IPR000504 GO:0003723
Vimu3g01719 452 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 87 IPR000504 GO:0003723
Vimu3g01719 452 PANTHER RNA BINDING PROTEIN 20 447 - -
Vimu3g01719 452 CDD RRM1_2_CELF1-6_like 23 98 - -
Vimu3g01719 452 MobiDBLite consensus disorder prediction 217 231 - -
Vimu3g01719 452 SUPERFAMILY RNA-binding domain, RBD 109 447 IPR035979 GO:0003676
Vimu3g01719 452 SMART rrm1_1 368 441 IPR000504 GO:0003723
Vimu3g01719 452 SMART rrm1_1 22 98 IPR000504 GO:0003723
Vimu3g01719 452 SMART rrm1_1 110 185 IPR000504 GO:0003723
Vimu3g01719 452 MobiDBLite consensus disorder prediction 332 360 - -
Vimu3g01719 452 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 189 IPR000504 GO:0003723
Vimu3g01719 452 Gene3D - 7 104 IPR012677 -
Vimu3g01719 452 Gene3D - 105 216 IPR012677 -
Vimu3g01719 452 CDD RRM3_CELF1-6 369 441 - -
Vimu3g01719 452 Gene3D - 336 444 IPR012677 -
Vimu3g01719 452 FunFam RNA-binding protein BRN1 335 444 - -
Vimu3g01719 452 SUPERFAMILY RNA-binding domain, RBD 15 103 IPR035979 GO:0003676
Vimu3g01719 452 FunFam RNA-binding protein BRN1 7 105 - -
Vimu3g01719 452 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 367 445 IPR000504 GO:0003723
Vimu3g01719 452 PRINTS Paraneoplastic encephalomyelitis antigen family signature 21 36 IPR002343 GO:0003723|GO:1990904
Vimu3g01719 452 PRINTS Paraneoplastic encephalomyelitis antigen family signature 129 141 IPR002343 GO:0003723|GO:1990904
Vimu3g01719 452 PRINTS Paraneoplastic encephalomyelitis antigen family signature 114 129 IPR002343 GO:0003723|GO:1990904
Vimu3g01719 452 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 102 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01719 Vimu-Chr3 31340165 31344285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01719 367 451 Eukaryotic Initiation Factors Gene Family AT4G34110 32.184 3.68e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01719 K13207 - gmx:100796156 738.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01719 3 31340165 31344285 Vimu3g01719 3 31340165 31344285 ECH