Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01715 ATGGAAGGCTGTGATGCGTCGGTTTTGTTGAACTCTACTGCGAATAACACGGCAGAGAGGGACGCTATTCCAAATCTTTCTTTGGCTGGCTTTGATGTCATAGATGCCATAAAAAGCGCAGTGGAAGCAAAATGTCCCAAAACTGTATCTTGTGCTGACATACTGGCATTGGCTGCAAGAGATGCTGTTTCTGTCCAATTTAATAAACCTATGTGGGAAGTTCTCACTGGTAGAAGAGATGGCACGGTATCAACAAGTAACGAAGCCTTGGCAAATATCCCAGCTCCTTTCTTCAACCTTACCCAACTCAGACAGAGTTTTGCTAGCAAAGGTCTAACTTTGCACGATCTGGTTGTATTATCAGGGGCACACACAATTGGAGTTGGGCATTGCAATTTGTTCAGTAACAGGCTTTATAATTTCACCGGGAAAGGTGATCAAGACCCTTCTTTGAATGGCACCTATGCTGCGTTCTTGAAGACGAAATGCCAGAGTCTGAGTGACACAAGCACAACGGTGGAAATGGACCCTGGAAGCTCGACCAATTTCGATAGTGACTATTATCCTAACCTTCTCCAGAAGAAGGGTCTGTTCCAGTCAGACGCTGCCCTTCTAACACTGAATCAATCAGCAGGGATAGCTGGAGAGTTGGTGAATGAAGACAAGTTCTTCACAGAGTTCGCACAATCAATGAAGAGAATGGGAAACATTGAGGTCCTCACTGACTCTGCCGGAGAAATAAGGAACAAGTGTTCTGTCGTCAACTCATAA 771 0.4488 MEGCDASVLLNSTANNTAERDAIPNLSLAGFDVIDAIKSAVEAKCPKTVSCADILALAARDAVSVQFNKPMWEVLTGRRDGTVSTSNEALANIPAPFFNLTQLRQSFASKGLTLHDLVVLSGAHTIGVGHCNLFSNRLYNFTGKGDQDPSLNGTYAAFLKTKCQSLSDTSTTVEMDPGSSTNFDSDYYPNLLQKKGLFQSDAALLTLNQSAGIAGELVNEDKFFTEFAQSMKRMGNIEVLTDSAGEIRNKCSVVNS 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01715 256 PRINTS Haem peroxidase superfamily signature 49 66 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu3g01715 256 PRINTS Haem peroxidase superfamily signature 176 191 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu3g01715 256 PRINTS Haem peroxidase superfamily signature 68 80 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu3g01715 256 PRINTS Haem peroxidase superfamily signature 116 131 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu3g01715 256 ProSitePatterns Peroxidases proximal heme-ligand signature. 116 126 IPR019793 -
Vimu3g01715 256 SUPERFAMILY Heme-dependent peroxidases 2 255 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vimu3g01715 256 Gene3D Peroxidase, domain 2 94 234 - -
Vimu3g01715 256 Gene3D - 2 255 - -
Vimu3g01715 256 PANTHER PEROXIDASE 25-RELATED 2 243 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu3g01715 256 PRINTS Plant peroxidase signature 190 207 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu3g01715 256 PRINTS Plant peroxidase signature 68 83 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu3g01715 256 PRINTS Plant peroxidase signature 174 189 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu3g01715 256 PRINTS Plant peroxidase signature 48 58 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu3g01715 256 PRINTS Plant peroxidase signature 115 127 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu3g01715 256 PRINTS Plant peroxidase signature 29 42 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu3g01715 256 PRINTS Plant peroxidase signature 229 242 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu3g01715 256 FunFam Peroxidase 94 234 - -
Vimu3g01715 256 Pfam Peroxidase 2 214 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu3g01715 256 CDD secretory_peroxidase 2 254 IPR033905 GO:0004601|GO:0042744
Vimu3g01715 256 ProSiteProfiles Plant heme peroxidase family profile. 1 255 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu3g01715 256 FunFam Peroxidase 2 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01715 Vimu-Chr3 31275970 31278133 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01715 1 256 Peroxidase AT1G05260 58.301 6.89e-99 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01715 K00430 - gmx:100806595 462.225