Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01698 ATGAAGGAAAAGGTGGACTCCCCCGTTACAGTTCTGGAAGACTATTTTAGGAGCTCGGATTCAGAATCAAGTTCTTCCAAAGATCCTGCAGTGGATTCTGAATCTCAAGACCTTTCAAAACATGCTTCTAGGTGGCATGCATTTCGTCACTTGTTTAGAAGTGGGTCGAAGAAACATACGAACACGTTGCACCCTCTCAGTGCCCTCAAGCTCTCCAAAAGAATGAGCACTAGCATGAGGGAAACCATTCTCCCAAGTTGTTTCTTGGATGCAAATGCATCCCCTTGCAGGTCACCGTGGAAGATCTTTACTCATCATGAGATTCAGGTTGCAACCAATTCATTTAGCCAAGAAAATTTGATTGGGAAAGGTGGCTATGCTGAAGTCTACAAAGGGTGTTTGCCAAATCGTCAGCTAGTGGCAATTAAACGTTTAACAAGAGGAACAGCTGATGAAATCATAGGGGATTTCTTATCAGAGCTCGGTGTGATGGCTCATGTAAACCATCCCAATACTGCTAAGCTGGTTGGCTATGGAGTGGATGGTGGAATGTATCTGGTTCTTGAGTTGTCTGAAAAAGGAAGCCTAGCTTCAGTTCTTTATGGTTCCAAGGAGAAGCTACCATGGTGTACAAGGCACAAAATTGCATTAGGAATAGCTAAGGGTATACTATATCTCCATGAGGGTTGTCAAAGAAGAATTATCCACAGGGATATAAAAGCAGCCAATATCTTGCTCACGGAGGACTTTGTGCCTCAGATTTGTGATTTCGGGCTAGCAAAATGGTTGCCAGAAAATTGGACTCACCACACCGTTTCAAAATTTGAAGGAACTTTCGGTTACCTTGCACCCGAGTACTTGCTACATGGCATAGTGGACGAGAAAACGGACATATTTGCCTTTGGTGTGTTGCTATTGGAATTAGTGAGTGGGCGTCGAGCACTTGATTATTCACAGCAAAGCCTTGTGTTGTGGGCAAAACCATTGCTCAAAAAAAATGATATTATGGAGCTCATTGATCCTTCACTAGCAGGTGACTTCGACTCCAGGCAAATGAATCTTATGCTCTTAGCTGCTTCTTTGTGCATACAACAGTCCTCGATTCGTCGCCCCTCTACAAGACAGGCACACTTTCAACAATGTGGGACTTTCAACAATGTGGTCCACTTTTTGTGTAGTGGCAGAACATCTGCGAGTCAACCCACTAACCCTTCTGTCCATTATGAAGCATGTGACTATGACAAAGTCCTTTATGAAGCATGTGACCCTTTGGTGCAGGTTGTACAGCTTCTGAACGGCAACCTTAGCTGCTTTAAGGGCATGAAGAAAACCCGAATGCCGTTCTTCAGAAGGGTCTTCCGAGAAGAACTTCATGATTCCGAATAG 1386 0.4401 MKEKVDSPVTVLEDYFRSSDSESSSSKDPAVDSESQDLSKHASRWHAFRHLFRSGSKKHTNTLHPLSALKLSKRMSTSMRETILPSCFLDANASPCRSPWKIFTHHEIQVATNSFSQENLIGKGGYAEVYKGCLPNRQLVAIKRLTRGTADEIIGDFLSELGVMAHVNHPNTAKLVGYGVDGGMYLVLELSEKGSLASVLYGSKEKLPWCTRHKIALGIAKGILYLHEGCQRRIIHRDIKAANILLTEDFVPQICDFGLAKWLPENWTHHTVSKFEGTFGYLAPEYLLHGIVDEKTDIFAFGVLLLELVSGRRALDYSQQSLVLWAKPLLKKNDIMELIDPSLAGDFDSRQMNLMLLAASLCIQQSSIRRPSTRQAHFQQCGTFNNVVHFLCSGRTSASQPTNPSVHYEACDYDKVLYEACDPLVQVVQLLNGNLSCFKGMKKTRMPFFRRVFREELHDSE 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01698 461 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 192 388 - -
Vimu3g01698 461 Pfam Protein kinase domain 116 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g01698 461 ProSiteProfiles Protein kinase domain profile. 115 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g01698 461 Gene3D Transferase(Phosphotransferase) domain 1 192 388 - -
Vimu3g01698 461 Gene3D Phosphorylase Kinase; domain 1 90 189 - -
Vimu3g01698 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Vimu3g01698 461 MobiDBLite consensus disorder prediction 14 32 - -
Vimu3g01698 461 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 86 189 - -
Vimu3g01698 461 PANTHER OS08G0249100 PROTEIN 6 394 IPR046958 -
Vimu3g01698 461 MobiDBLite consensus disorder prediction 1 37 - -
Vimu3g01698 461 SMART serkin_6 115 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g01698 461 SUPERFAMILY Protein kinase-like (PK-like) 96 377 IPR011009 -
Vimu3g01698 461 ProSitePatterns Protein kinases ATP-binding region signature. 121 143 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01698 Vimu-Chr3 31124487 31127176 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01698 102 375 Trihelix Transcription Factor Family AT1G68690 41.754 7.16e-66 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vimu3g01698 Pkinase 1.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01698 - - gmx:100780587 735.717