Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01680 ATGATTCCGTGGGGTGGCCTCAGTTGCTGTTTGAGTGCTGCTGCCCTTTATCTTCTCGGCAGAAGCAGCGGCAGGGATGCGGAAATTCTTAAATCGGTTACGAGGGTCAATCAGTTGAAGGAACTGGGTATGTATCTTTTTCGGGACTTGAATCCTCAATTGTTCGAAAATTTGAGTTTACTACTTGATAATGAGATGTTATGGTTTCTGATCATGCCTGGGTCTCCTCACTTTTCAGCTCAACTGTTAGATGCTGAAATATTACCCTTGATTGTTACAATTTCTGGAAGAGTCGGCTCTGAAACCCCAATTAACTGTGAGTTCAGTGGTTTAAGAGGCGTAATAGTTGAAGAAACAGCAGAGCAGCATTTTCTTAAACACAATGATGCTGGTTCCTGGATACAAGATTCTGCTTTGATGCTATCAATGAGTAAAGAGGTTCCTTGGTATCTGGATGATGGGAGTGATCGTGTGCATGTGGTTGGAGCTCGGGGTGCCACTGGTTTTGCATTACCTGTTGGAAGTGAGGCATTTGAAGAGTCAGGTCGGTCACTTGTACGTGGAACATTGGATTATCTCCAAGGTCTCAAGATGCTTGGGGTCAAGAGAATTGAACGGGTACTTCCTATTGGAACTTCCTTGACGGTTGTTGGTGAGGCTGCTAAAGATGACGTTGGGACCATTCGAATTCAACGACCCCACAAAGGACCATTTTATGTCTCTCCCAAAACAATTGATCAACTAATTGCAAATCTGGGAAAATGGGCAAGGTGGTATAAATATGCCTCTGTGGGCTTGACAGTGTTTGGTGCTTATCTGATAGCTAAGCATGCTATTCGGTACATATTGGAAAGACGTCGCCGCAGCGAACTACAAAGAAAGGTTCTTGCTGCTGCTGCTGCGAAGAAGTCAGGATCAAATAATGATGTTGAAAAGGCGGACAGCTTATCAGATGTTGCTAAAAGGGATCGTTTAATGCCGGATTTGTGTGTAATATGCCTTGAACAGGAATACAATGCTGTTTTTGTTCCAAGGTTGTCAAGACTTTCCGTCATTGACAAACGATACATGGAAGCCCAACTAAAACAAGTCACTTGGAATGAGGAATTGTGCCTTAACAATCCAAGGGCAACAAAATTGGTCACTTGTGCGGTGATAAGTGTTCTGGGGTTTGCTGAACCCCTGTGCTGTGGCTTTGAGAACTTGGCGTGTTGGCATAGAGTGAGAACTTTCATAGGTGTTGTGATTGAGTGCTGTTGCTGTTGGCATAGAGCGAGAACTTTCACAGGAATTGAAAGCCTATCATCCTTCGTGAAGCATTCGAAGGAGGTGTTCATCCTTTGTGAAGATTCAGAGGAGGTGTTCATCCCTTGTGGGTTACAGGGGAAGTGA 1392 0.4425 MIPWGGLSCCLSAAALYLLGRSSGRDAEILKSVTRVNQLKELGMYLFRDLNPQLFENLSLLLDNEMLWFLIMPGSPHFSAQLLDAEILPLIVTISGRVGSETPINCEFSGLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDGSDRVHVVGARGATGFALPVGSEAFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPIGTSLTVVGEAAKDDVGTIRIQRPHKGPFYVSPKTIDQLIANLGKWARWYKYASVGLTVFGAYLIAKHAIRYILERRRRSELQRKVLAAAAAKKSGSNNDVEKADSLSDVAKRDRLMPDLCVICLEQEYNAVFVPRLSRLSVIDKRYMEAQLKQVTWNEELCLNNPRATKLVTCAVISVLGFAEPLCCGFENLACWHRVRTFIGVVIECCCCWHRARTFTGIESLSSFVKHSKEVFILCEDSEEVFIPCGLQGK 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01680 463 Pfam E3 Ubiquitin ligase 122 270 IPR022170 GO:0004842|GO:0006996|GO:0016567
Vimu3g01680 463 PANTHER - 1 344 IPR044231 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01680 Vimu-Chr3 30870846 30876249 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01680 1 302 C3H Transcription Factor Family AT1G63900 69.205 4.49e-145 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01680 K15688 - gmx:100803252 551.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01680 3 30870846 30876249 Vimu3g01680 3 30870846 30876249 ECH