Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01662 ATGACCATCTCGATGTTCATGTGCAGATTAAGACAACCCATGATAAACATTCCCTGCAGTGGGAAAAAACTGAACTTTAGACAAATTGAGAAAGAGAAAGTAGTGGTTGTAATGGGAGCCACAGGGGCAGGGAAGTCAAGGCTGTCCATTGACATAGCCTCATGTTTTCCATCAGAAATCATAAACTCAGACAAAATTCAAGTGTACCAAGGTCTCGACATAGTCACAAACAAAATCCCAAAGGAAGACCAACGTGGGGTGCACCACCACTTACTGGGAACAATAAACCCCGACATAGACTTCACACCCACTGATTTCATTCACACGTCATCATCCGCCATTGACACCATCACCACAGCCCAGAAGCTTCCAATCATCGTTGGCGGCTCTAACTCCTATCTCGAGGCCTTGATCGACGATGACGATTACAAGTTCCGGTCGCGCTACGATTTTCTCTGCATCTGGGTTGACGTGGCAATGCCCGTGCTTCAATCCTACGTGGCGGAACGGGTTGACGACATGTTCCGTAAGGGAATGGTGGAGGAGCTGCGACCCTTTTATAGTCCCGGCGGGGATTACTCGAGAGGGATTAGAAGAGCCATTGGGGTTCCTGAATTTGACGAGTATTTTCGGAGGGAGGAGTTTGTGGACGAGGAAACGAAGCAGAGGTTGTTGGAAGATGCGATCAGGGAAATAAAATTGAACACGTGGAAACTTGCCATGAAACAGTTGGGGAAGATTCACAGGCTGAGGAGCGTTAAGAGATGGAAGATTCATCGCTTGGACGCCACGCCCGTGTTTCGAAGGCGTGGAGAAGAAGCCAACGAGGCCTGGAAGAAGGTGGTGGCGGAACCGACTGCTATGGTTGTTGCGCGCTTTCTCTATAACTCCAAAAACAATGCTAACGTTGTTTCTGGACTTACACTGTTGCCACCTTCCGAGAATGTTATGGCTGCGGCAACGTGCTAG 969 0.4881 MTISMFMCRLRQPMINIPCSGKKLNFRQIEKEKVVVVMGATGAGKSRLSIDIASCFPSEIINSDKIQVYQGLDIVTNKIPKEDQRGVHHHLLGTINPDIDFTPTDFIHTSSSAIDTITTAQKLPIIVGGSNSYLEALIDDDDYKFRSRYDFLCIWVDVAMPVLQSYVAERVDDMFRKGMVEELRPFYSPGGDYSRGIRRAIGVPEFDEYFRREEFVDEETKQRLLEDAIREIKLNTWKLAMKQLGKIHRLRSVKRWKIHRLDATPVFRRRGEEANEAWKKVVAEPTAMVVARFLYNSKNNANVVSGLTLLPPSENVMAAATC 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01662 322 Gene3D - 31 294 IPR027417 -
Vimu3g01662 322 Pfam IPP transferase 67 140 - -
Vimu3g01662 322 Pfam IPP transferase 145 244 - -
Vimu3g01662 322 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 31 293 IPR039657 -
Vimu3g01662 322 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 160 258 - -
Vimu3g01662 322 FunFam Adenylate isopentenyltransferase 5, chloroplastic 160 258 - -
Vimu3g01662 322 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 187 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01662 Vimu-Chr3 30740122 30741468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01662 147 294 C2H2 Transcription Factor Family AT2G27760 31.429 1.56e-21 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01662 K10760 - gmx:100803964 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01662 3 30740122 30741468 Vimu3g01662 3 30740122 30741468 ECH
Vimu6g02849 6 25182366 25183735 Vimu3g01662 3 30740122 30741468 PCT