Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01660 ATGGAAGAGCAAAGTAATGAAGAGAACCCTGTGCAACTAACATCCTGTGACACTGGGGGCACAGCCAATGATGTCTCTCACTCAGCTGAGGGTCATCTCATTCCCAACCCAAAATTTTTCATTGCAGCATCATCTGGAAGAAATGAGAGCCACTGGACTTGCTTTCCAAAACCATCTCATAACTATGTTAAGTATCTTTCAGAATCCTCAACTTATCTGCCAAACACTTCCACTGATTACATGATGGGGGGTAGTTATCTACCTGTTGGCAGCATCACTGATGGCAACGTGGTTAATGGATCAGACAGAAACTTCTTTTACAATGATCCAGGGAAAGTTTGTGCCTTTAAGCCTATTGGTTCTTCAAGTAATGACCTTGACATTAAGAAGCAGGTGGGGTTTTGGAGGGCTGATGAAGGAGAGGAAGTGATTAAAGTTGAAACTGAAAGTAGTCAAAATTTTCTTTATGCTGAGAGTCATCCTTTATGGACAGCAGATTCTCTTGGAGATAAGCATAACGCTTTACATGATCCAATGGTAATGGTTGGTGCACCTGCTTCACTTCCCAAATCAGGATCCAGCTCCTCAAAAGAGAAAGCACGTGTCACTGACCGTCAACGCAGGCAACGTATCGCTGATAACCTCAAAGCCTTACATGAATTGCTTCCAAATCCAGAAGAGGGAAGTCAAGCATACATACTGGACGATATTATTGACTATGTCAAATATTTACAGCTTCAAATAAAGGAACAAAGTGGAAGTAGATTGCAAGAAGAATCAACTGGTATACCACTAGTTTTTCATGAGGGTTACGGTCATTATATCAACCAACAGATGCTGAATGAACCCCTTGAGGAGATAATGGGGAAACTACTTGAAGAACATTCTGCAGCAGCTGGTCAGCTACTAGAGAGCAAGGGTCTTTTCCTGCTGCCTATGGCTTTGGTTGATGATTTGAATGAGGCTATGCAAACGTTTGGCGAGAGTGCTCTAGTCTGA 999 0.4244 MEEQSNEENPVQLTSCDTGGTANDVSHSAEGHLIPNPKFFIAASSGRNESHWTCFPKPSHNYVKYLSESSTYLPNTSTDYMMGGSYLPVGSITDGNVVNGSDRNFFYNDPGKVCAFKPIGSSSNDLDIKKQVGFWRADEGEEVIKVETESSQNFLYAESHPLWTADSLGDKHNALHDPMVMVGAPASLPKSGSSSSKEKARVTDRQRRQRIADNLKALHELLPNPEEGSQAYILDDIIDYVKYLQLQIKEQSGSRLQEESTGIPLVFHEGYGHYINQQMLNEPLEEIMGKLLEEHSAAAGQLLESKGLFLLPMALVDDLNEAMQTFGESALV 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01660 332 CDD bHLH_AtbHLH_like 203 250 IPR045239 -
Vimu3g01660 332 MobiDBLite consensus disorder prediction 186 206 - -
Vimu3g01660 332 Gene3D - 193 262 IPR036638 GO:0046983
Vimu3g01660 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 195 244 IPR011598 GO:0046983
Vimu3g01660 332 MobiDBLite consensus disorder prediction 1 22 - -
Vimu3g01660 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 192 255 IPR036638 GO:0046983
Vimu3g01660 332 MobiDBLite consensus disorder prediction 7 22 - -
Vimu3g01660 332 Pfam Helix-loop-helix DNA-binding domain 197 245 IPR011598 GO:0046983
Vimu3g01660 332 SMART finulus 201 250 IPR011598 GO:0046983
Vimu3g01660 332 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 71 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01660 Vimu-Chr3 30721378 30723660 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01660 202 322 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 39.024 3.78e-20 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu3g01660 HLH 8.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01660 - - gmx:100788949 460.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01660 3 30721378 30723660 Vimu3g01660 3 30721378 30723660 ECH