Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01650 ATGGCAGAGAGTTCTTCATCATTCACTGCATCGGCTTCTCCCACTAGCTACGAAGTGTTTCTGAACTTCAGTGGAGAAGACACTCGTGAGAACTTCATTAGTCACCTTTATGCCGCGCTGGAGAGGAAGCACATTGAAACATATATTGATTACAGACTACAAAGGGGTGAAGAAATTTCACCTGCACTGCAAACTGCAATAGAAGAATCAAAGATCTATGTCCTCGTTTTCTCTGAAAACTATGCATCTTCGACGTGGTGTTTGAATGAACTGACTAAGATACTGGATTGCAAGAAGAGATATGGAAGGGATGTGATACCCGTTTTCTACAAGGTGCATCCAACAACTGTCAGAAAACAAGAAGAGAGATACAAAGAAGCATTTGAAGAGCATAAACTGCGGTTTAAGGAAGACATGGGCAAAGTGCAAGGATGGAAGGATGCTCTAACTGAAGCTGCTGGACTCTCCGGCTGGGATTCAAACCTTATCAGTTATAATCAAGGAATCATCGGCATTGAAAAACATATTGAAGAAATTCAATCCTTGTTGGATCTTGAGTCACCGGATATTCGAACCATAGGAATTTGTGGCATGGGAGGAATGGGAAAAAGTACAATTTCTGAACAATTATATCACACATTGACAATGAAGTTTGATTCCCACAGCCTTGTTTTAGATGTTCAAGAAAAACTACAAAGAGAGGGAATACACAATATCATAACAAAATATCGATCTGAGCTTCTAAAGGAAACATCATCCCCTCATTTATCATATTACAATGAACGGCTTAAACGAACAAAGGTCCTCCTCATTCTTGATGATGTGACCGATTCAATTCTATTAATGGGAGGATGTGATCGTTTTGGACTGGGTAGTAGAATCATTATCACCAGTAGAGACAGACAAGTACTTAAGAATGCTGGAACTGATGATATCTATGAACTTAAGGAGTTGAACTTTTATGATTCTCTAAAACTTTTTAATTTACATGCTTTTAAACAAAATTCTTCAAAAGAAATTACTTACATGGACTTGTCCATAAAGGTGTTGAGATATGCAAAAGGGGTTCCGTTAGCTCTCCAAAGTTTGGGCTCATTGCTTTATGGCAGACAAAAAGAAGAATGGGAAAGTCAGTTGCAAAAGTTGGAAAAGGGCCATGTTGAAACTTTTAATGTACTAAAATTAAGTTATGATGGGCTTGATGAGGAGCAAAAGAACATATTTCTTGAAATAGCTTGCTTTTACAGGGGACACAACGAGATTGTGGTAGTAGAAACACTAAATGACTGTGGTTTCTCTTCTAAGATTGGAATGGATGTTCTCAAAGATAAATGTCTCATATCTATCTTGGATGGTAGAATTGTGATGCACGATCTAATACAAGAAATGGGTCAAGAAATTGTTCGTAAAGAATGTCCTCAACATCCTGGAAAACGCAGCCGATTATTCAACGCTGACGAAATTCATGAGATTTTAAGAACGAACAAGATTCTTTATTGGACTGGTTTTCATCAAAAATCTTTGCCATCGAATTTTTGTCCACAAAATTTAGTGAGACTCGAAATGCCAGAGTGTCATATTGAACAACTGTGGAAAGAAGATCAGAGTTTACCGAAGTTGAAAAGGCTAAACCTGAGTTGTTCTGGGAAACTTACTAGATTACAAGACCTTTCCATGTCACCAAATATTGAAGAAATAATTCTCAATGATTGTCCAAAGCTGATTAAAATTCACTCTTCCATATTACTCAGCAAACTCAGTTATTTACGTTTAGATGGATGTGATAATCTCAATAGTGTAACTGTTTCCAGTAATATTCTATCCAGATCACCAGGACTCATTCTTCTTTCCCAGTGTTCCAAGCTTGAAATGTTTTCAACCTGTCAACCCAGATTCCCTCATGTGAAACTGGAGCGTCAACGTGGAACTTTCTCAAGATCTCTTCGTGAGAAACCGGAGTATCAACCTGGAACTGTCTCAAGTTTCCTTCGTATAGAACGTAGAGCTCTTTCAAGATCCTTTGTTAGGGATGGTCTGGGTGAACCTGATTATTTTGATGAACTTTGTGAGTTAGACAATGCTTCTAATTCGTTCTCAACAATATCCCTTCCCAGTGAAATTTTCTCAATTATTTTTATGAGATATGTGGAAGAAGAAAAAGAAGCTACTAATAATAATATATACGTATATGATGAAAGGCCGATACAACTCACTGGAGGTGTGCCCTTAAATTTTCAAAGTCTCAAGAAGCTCTGTTTCATAGATCTCTCAAACTGTTCTTCCCTTACAATATTTCCATTTGACATTTCTGAGATTAAATTCCTAAAGAAACTTCGTCTCAGTGGTTGCTCAAAATTGGAAAATTTCCCCGAGATTGAGAACACCATGGAAGATTTATCGGTTCTCCTCTTAGACTGCACAGCCATACACACACTACCTTCATCCTTGTGTCGTTTGGTAGGGCTTCAAGAACTGAGTTTGCGCAGTTGCTCGAATCTTGAGATTATTCCATCTTCCATTGGAAGGCTCACCAGACTATGCAAGTTAGACGTTACCTACTGTGAATCACTTCAAACTTTTCCAAGCACCATTTTCAAATTGAAGTTGAGGAAACTTGATTTGTGTGGTTGCTTTAAGTTGAGGACCTTCCCAGAGATCATGGAGCCGACACAAACTTTTGTTCACATTGACTTAACAAAAACGCTTATCAAAGAACTCCCTTCCTCGTTTGGCAATTTGGTTAAGCTTCGATCCCTGCAGCTCAATAGTTGCTCTGCTCTTCAGTCACTTCCAAACTCCATTGTTAATCTAAAGCATCTCTGTAAACTTGATTGTTCGAGGTGTTATAAATTAACAGAAATCCCAAGACACATAGGTCGGTTGACGTCATTAGTGGAACTGTCACTGAGTGAAAGCGGAATCGTGAACCTTCCTGAGAGCATTGCTCATCTTTCGAGCTTGAAATCGCTTGATTTAAGCTATTGCAAAAAGCTTGAATGCATCCCACATATTCCCCCATTTCTAAAACAATTGGTGGCATTGGATTGCACATCCATCAGAGGAGTGATGTCAAACTCAAATTCTCTTGTTCCAAACCTCTCAAACTCCAAAGAGGGTTTCTTCAGATTTCATTTCACCAATGCTCAACAACTGGATTCAGGTGCTCGTGCTAACATTGAGGAGGATGCAAGGTTTAGGATGAGAGACTATGTGTATGGGTCTGTGTGCTTCTGTTTTCCAGGGAGTGCAGTTCCTCATTGGTTCCCTTTTCGCAACGAAGGACCTTCAGTGAGTATAAATGAAGATTTAAGTTTGTGCAGCGATGACAGGCTAATTGGTTTCGCTTTGTGTGTGGTTTTGGGAGTATTAGATACGAATGATATTAAAAGCAGATACGGTTCTTTTGGTTACAGCCTAAAATTTGAATGTGATGACGATGACACACAGATAATTCCAAATAATGATGTGTTAAACAACTATTTCACATGGGGTTATAGTCCCAGACTCCTTGATAAAGATCACATATTTATGTGGAAATTTAACTTGGAGAGCCTAAGGAGGAGAAGCATGAACCTTAGGCTCTGTGATGCTCGCAGCTTCACTTTTGAGATCAGTCCATATGATTATAACTCTCAGTGGCCAGATTACGACTCCGTTAGTCTTCAAGGTAAACAAAGGAAGATAGGAAGAGGAAGGCTAGTCTCTTGCTCTTCTGCTAATTGGTCTTCCCTTGTCAACTATGGTAATTGGAATCTGCAATTGATATTGGATCTCGACGTTTGGGATGTTGTAGAGTGTGGGAAACGAGAACCCACGAAATACGAAGAGCAGATCCAGATGTTTGCAGTGAAAAATACGCAAGTGAAGGACAGGTTCTACGAGATTATAGACGAGTCCACAACGGGGACAACTGTGTTAGGCAAGATCAGCTTCAAACTCTGGGAGGGGGAGTTTGAAATTTTGAAGGAGAAAGTGGCAGATCAACTCGACAGAAATGGAGAGTCACTGCCTGCCAGCCGAGTTGTGGAGAAGAGTTTGAAATCATTAATAGATGATTTTGAGAGTTTTGTGTGCATCATCAAGGAGTTGAAGGACCTATCAAAGCTCATGGTTGAAGACTTTGACTGGACGATCCTGGGAGCAGAGGTCAAGAAAAATAAGGAGAAGAGGTATGGGATCAAAGGTCGAGAAGAAAAAGGAGTAGAGCGTTTTGGAAAAAAAGAGTGCATAGTGGATGAGGGTAAAATTGGGAAAAACAGAATTTGGGAAACGTTCTTCTTTCGCGCTCCTCCATTCTTCTCCTTTAGTGGTGCCCTTATTCTGATTTCTGCTTCTTTGGTGCTTCAATCGCTGGTGCCGCTCCCAATCTCGTCTCTCGATTGTGAGTTTAAGGTAGGGGTTTTGTTTTTTGATCTCTCCTAA 4422 0.3962 MAESSSSFTASASPTSYEVFLNFSGEDTRENFISHLYAALERKHIETYIDYRLQRGEEISPALQTAIEESKIYVLVFSENYASSTWCLNELTKILDCKKRYGRDVIPVFYKVHPTTVRKQEERYKEAFEEHKLRFKEDMGKVQGWKDALTEAAGLSGWDSNLISYNQGIIGIEKHIEEIQSLLDLESPDIRTIGICGMGGMGKSTISEQLYHTLTMKFDSHSLVLDVQEKLQREGIHNIITKYRSELLKETSSPHLSYYNERLKRTKVLLILDDVTDSILLMGGCDRFGLGSRIIITSRDRQVLKNAGTDDIYELKELNFYDSLKLFNLHAFKQNSSKEITYMDLSIKVLRYAKGVPLALQSLGSLLYGRQKEEWESQLQKLEKGHVETFNVLKLSYDGLDEEQKNIFLEIACFYRGHNEIVVVETLNDCGFSSKIGMDVLKDKCLISILDGRIVMHDLIQEMGQEIVRKECPQHPGKRSRLFNADEIHEILRTNKILYWTGFHQKSLPSNFCPQNLVRLEMPECHIEQLWKEDQSLPKLKRLNLSCSGKLTRLQDLSMSPNIEEIILNDCPKLIKIHSSILLSKLSYLRLDGCDNLNSVTVSSNILSRSPGLILLSQCSKLEMFSTCQPRFPHVKLERQRGTFSRSLREKPEYQPGTVSSFLRIERRALSRSFVRDGLGEPDYFDELCELDNASNSFSTISLPSEIFSIIFMRYVEEEKEATNNNIYVYDERPIQLTGGVPLNFQSLKKLCFIDLSNCSSLTIFPFDISEIKFLKKLRLSGCSKLENFPEIENTMEDLSVLLLDCTAIHTLPSSLCRLVGLQELSLRSCSNLEIIPSSIGRLTRLCKLDVTYCESLQTFPSTIFKLKLRKLDLCGCFKLRTFPEIMEPTQTFVHIDLTKTLIKELPSSFGNLVKLRSLQLNSCSALQSLPNSIVNLKHLCKLDCSRCYKLTEIPRHIGRLTSLVELSLSESGIVNLPESIAHLSSLKSLDLSYCKKLECIPHIPPFLKQLVALDCTSIRGVMSNSNSLVPNLSNSKEGFFRFHFTNAQQLDSGARANIEEDARFRMRDYVYGSVCFCFPGSAVPHWFPFRNEGPSVSINEDLSLCSDDRLIGFALCVVLGVLDTNDIKSRYGSFGYSLKFECDDDDTQIIPNNDVLNNYFTWGYSPRLLDKDHIFMWKFNLESLRRRSMNLRLCDARSFTFEISPYDYNSQWPDYDSVSLQGKQRKIGRGRLVSCSSANWSSLVNYGNWNLQLILDLDVWDVVECGKREPTKYEEQIQMFAVKNTQVKDRFYEIIDESTTGTTVLGKISFKLWEGEFEILKEKVADQLDRNGESLPASRVVEKSLKSLIDDFESFVCIIKELKDLSKLMVEDFDWTILGAEVKKNKEKRYGIKGREEKGVERFGKKECIVDEGKIGKNRIWETFFFRAPPFFSFSGALILISASLVLQSLVPLPISSLDCEFKVGVLFFDLS 1473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01650 1473 SUPERFAMILY L domain-like 496 813 - -
Vimu3g01650 1473 Gene3D Ribonuclease Inhibitor 683 890 IPR032675 -
Vimu3g01650 1473 Gene3D Ribonuclease Inhibitor 490 648 IPR032675 -
Vimu3g01650 1473 Pfam TIR domain 17 160 IPR000157 GO:0007165
Vimu3g01650 1473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 409 IPR027417 -
Vimu3g01650 1473 Pfam C-JID domain 1079 1190 IPR045344 -
Vimu3g01650 1473 ProSiteProfiles TIR domain profile. 15 183 IPR000157 GO:0007165
Vimu3g01650 1473 SMART till_3 16 155 IPR000157 GO:0007165
Vimu3g01650 1473 SUPERFAMILY "Winged helix" DNA-binding domain 390 492 IPR036390 -
Vimu3g01650 1473 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 626 IPR044974 GO:0006952
Vimu3g01650 1473 Gene3D - 318 401 IPR042197 -
Vimu3g01650 1473 Gene3D - 1 152 IPR035897 -
Vimu3g01650 1473 SUPERFAMILY L domain-like 731 1017 - -
Vimu3g01650 1473 PRINTS Disease resistance protein signature 192 207 - -
Vimu3g01650 1473 PRINTS Disease resistance protein signature 262 276 - -
Vimu3g01650 1473 PRINTS Disease resistance protein signature 982 998 - -
Vimu3g01650 1473 PRINTS Disease resistance protein signature 353 367 - -
Vimu3g01650 1473 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 158 IPR035897 -
Vimu3g01650 1473 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 184 - -
Vimu3g01650 1473 Gene3D Ribonuclease Inhibitor 891 1021 IPR032675 -
Vimu3g01650 1473 Pfam NB-ARC domain 173 388 IPR002182 GO:0043531
Vimu3g01650 1473 Gene3D - 156 312 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01650 Vimu-Chr3 30615456 30624927 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01650 770 990 WRKY Transcription Factor Family AT4G12020 32.579 2.52e-18 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01650 - - var:108318722 1949.1