Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01644 ATGGCTGCACCACTAGGCAATAGGCTTCAAAGCATGTTGCAGGCTGCGGTGCAATCTGTTCACTGGACTTATAGCCTCTTCTGGCAACTTTGCCCACAACAAGTGATTCTGGTTTGGGGTGATGGGTACTACAATGGGGCAATCAAGACTAGGAAGACGGTGCAACCAATGGAAGTGAGTGCTGAGGAGGCATCTCTCCAAAGAAGCCAGCAACTTAGAGAACTCTATGAATCACTGTCTGCCGGAGAGACAAATCCGCCAACTCGACGGCCTTGCGCCGCCTTGTCGCCAGAGGACTTAACAGAATCAGAATGGTTCTATTTGATGTGTGTCTCATTCTCCTTTCCTCCTGGTGTTGGGTTGCCTGGAAAGGCATATGCTAGGAGGCAGCATGTTTGGCTCACTGGTGCAAACGAGGTGGACAGCAAAACATTTTCACGAGCTATTCTAGCCAAGACAGTGGTGTGCATTCCTTTATTGGACGGCGTTGTTGAGTTTGGTACAACGGATAAGGTTCAAGAAGACCTTAACTTCATCCACCACGTGAAGACATTCTTCGCAGAACACCACCACCCTCTGCCGCCCAAACCCGCCTTGTCCGAGCACTCAACCTCCAACCCCATCTCCTCCTCCGACCACATCCCCGCCGTCATGTACACTGTCGCAGACCCACCCGCAGCCGATCCCGCCCTAAACGACGAGATGGACGAAGATGAAGAGGAAGAGGATGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGGGGCGGAGTCCGCCTCTGAGGACGAGACCCGAGACCGCATTGCTCGCCGGGTCACGACTCCGGAGATGGAGGACGTGACGAGAGCGGAGCCCAGCGAGCTGATGCAGCTGGAGTTGCCGGAGGATATCCGGGTGGGGTCTCCGAACGACGGGTCGAACAACTTGGACTCGGACTTCCACTTGCTGGCGGTGAGTCAAGGAGGGAACGCGGCGGGGCAGGCTGAGTCGAGCGTGAGGTGGGGCCCGAGTGAAGAGGCGTTACAAGTTCAACTACCAGCTTCAGCACCGCATCTATTAGAAGACTTGACCCAAGAGGACAATCACTACTCTGAAACCGTATCCAACATTCTCCAAAACCAGTCCAGCCGGTGGCCCACATCGCCGACCTCCGTTGACTACATCACATACTCCACGCATTCAGCTTTCACAAAGTGGAGCAGCCGCGCCAGCCACCTCTTCCACCCGGCGGTCGACGGCCCCAGCCAGTGGCTCCTCAAGTACATTCTCTTCACCGTCCCCTACCTCCATGCCAAGAACCCTGCCGACACCTCTCACCAAACCGCCACCGACTCCAAGCTGCGCGGCAAGGGAACGCCGCAGGACGAGCTGAGCGCCAACCACGTGCTCGCGGAGCGCCGCCGCCGCGAGAAGCTGAACGAGCGTTTCGTAATCCTGCGGTCACTGGTACCCTTCGTCACCAAAATGGACAAGGCATCAATTCTTGGTGACACCATCGAGTATGTGAAGCAGCTGCGGCGGAAGATCCAGGAGCTTGAGGCGCGGAACCGGCACACTGAGGCGGAACACCGTTCGAAGCTCCCTGAGGTAACGGTTCAAAGGACGAGCAGCAATTCGAGCAAGGAGCAGCAGAGGAGTGGGGTGACGGTGATGGAGAAGAGGAAGGTGAGGATTGTGGAAGGGGTGGCGGCAAAGGCGACGGCGGTGGAGGCTGAGACGGCAACATCAGTGCAAGTTTCGATCATTGAGAGCGACGCACTGTTGGAGATCGAGTGCGTGCACAGAGAAGGGTTGCTTCTTGATGTGATGCAGATGCTGAGGGAGGTGAGGATAGAGGTTATTGGGGTGCAGTCAACACTTAGCAATGGGGTTTTCACGGCGGAGCTGAGGGCTAAGGTGAAGGAACATTCGAACGGGAAGAAGGTGAGCATTGTGGAAGTGAAGAAGGCACTTAACCAAATCATTCCCCATCCTCTTCACTGA 1986 0.5614 MAAPLGNRLQSMLQAAVQSVHWTYSLFWQLCPQQVILVWGDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGETNPPTRRPCAALSPEDLTESEWFYLMCVSFSFPPGVGLPGKAYARRQHVWLTGANEVDSKTFSRAILAKTVVCIPLLDGVVEFGTTDKVQEDLNFIHHVKTFFAEHHHPLPPKPALSEHSTSNPISSSDHIPAVMYTVADPPAADPALNDEMDEDEEEEDEEEEEEEEEEEEGAESASEDETRDRIARRVTTPEMEDVTRAEPSELMQLELPEDIRVGSPNDGSNNLDSDFHLLAVSQGGNAAGQAESSVRWGPSEEALQVQLPASAPHLLEDLTQEDNHYSETVSNILQNQSSRWPTSPTSVDYITYSTHSAFTKWSSRASHLFHPAVDGPSQWLLKYILFTVPYLHAKNPADTSHQTATDSKLRGKGTPQDELSANHVLAERRRREKLNERFVILRSLVPFVTKMDKASILGDTIEYVKQLRRKIQELEARNRHTEAEHRSKLPEVTVQRTSSNSSKEQQRSGVTVMEKRKVRIVEGVAAKATAVEAETATSVQVSIIESDALLEIECVHREGLLLDVMQMLREVRIEVIGVQSTLSNGVFTAELRAKVKEHSNGKKVSIVEVKKALNQIIPHPLH 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01644 661 MobiDBLite consensus disorder prediction 518 548 - -
Vimu3g01644 661 MobiDBLite consensus disorder prediction 223 289 - -
Vimu3g01644 661 Pfam Helix-loop-helix DNA-binding domain 460 507 IPR011598 GO:0046983
Vimu3g01644 661 MobiDBLite consensus disorder prediction 261 289 - -
Vimu3g01644 661 PANTHER TRANSCRIPTION FACTOR TT8 7 657 - -
Vimu3g01644 661 MobiDBLite consensus disorder prediction 435 449 - -
Vimu3g01644 661 MobiDBLite consensus disorder prediction 193 212 - -
Vimu3g01644 661 MobiDBLite consensus disorder prediction 531 547 - -
Vimu3g01644 661 SMART finulus 463 512 IPR011598 GO:0046983
Vimu3g01644 661 MobiDBLite consensus disorder prediction 434 458 - -
Vimu3g01644 661 Gene3D - 458 529 IPR036638 GO:0046983
Vimu3g01644 661 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 186 IPR025610 -
Vimu3g01644 661 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 459 526 IPR036638 GO:0046983
Vimu3g01644 661 Coils Coil 231 260 - -
Vimu3g01644 661 MobiDBLite consensus disorder prediction 230 260 - -
Vimu3g01644 661 Coils Coil 496 523 - -
Vimu3g01644 661 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 457 506 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01644 Vimu-Chr3 30519681 30530281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01644 299 658 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 37.432 5.93e-54 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu3g01644 bHLH-MYC_N 1.2e-47 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01644 - - gmx:100786815 1021.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02838 6 25084571 25085053 Vimu3g01644 3 30519681 30530281 PCT
Vimu6g02334 6 20405700 20408342 Vimu3g01644 3 30519681 30530281 PCT