Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01619 ATGAGGGAGGGGCTGAGATCGCGGGCGCGATTGGGGACGGTTTCTGGAGGCGAAGAAGTTGTTACAAAGAAAAAGGTTGTTGTGAAGAGCGAGGCTGTTGCTAAGGATGGTGAGGGTTTGGAGGTGCAGAACTCAACGGTTGAGAAGAAGGTTGAAGTTGCACGTGATGTTAAAGAAGAATGTGGCTTTGATTTGAATGTGAGTGCAAGTGGAGAGGTTGACTTGGAAGAGAATGGGAGTGGTAAGGGTTGTTTTAGTGGTGGGGGTGATATTGTAGTAGCTGAGGTAGATAAGAAGGCAAAGAAGGAGCAAGGTTCAAATAATGAGGGACTGGTTGGGGGTCGAGTGTTGCGCTCACGGTCTAAGGGGGGGAAGGATAGAAGAGTGTATTACGGAGAGAATGAGGATGTTGTTTCTGAGAGTGATAGAGAATGTAGTGGGGTTGAGAGTGTGAAAGTTAAGACGGAATGTGAAGAAGCTGGTGAGTTTTTGGGCGATAGTTATGAGAATGAAAAAACTAAGGTGAAGAAGGCAGAGAATGGAACGGGGAATTTGAAACGGAAGCGTGGGCGGCCTCCCAAAATAAAGTTGGAAGTGGAAGATCAACCAGTTCATCAGTTGCCACGTAAGCGTGGAAGACCCCCTCTTGCCAGCAAACAAAACCATGTAGTGGTGCCTAATAGAAAAGAAAAGGCTGTCCTTCGGAAAGATAAAAAGGTTTTAACTATGAAGCATGATGCTAATGTGAATGCAATTGATGATGCAGATTCAAGGAAATCTGCTGGGGATGAGTTAGAAAAGAAGGAAGTCTCTCCTGTCAAGAAGTCTAAATTTACTAAGGCTCTGGAAACTGGCAACAATGTGGTGGCCTCACCAGTAAGATCAAATACTGAGAATGCACTTGTCACTGAGAAAAATGGAAGAAATAGATTTAAGCAGTTAGTGAGGGATCAAATAAAGGAAATTCTCTCAGCTGCCGGCTGGACAGTTGACTATAGACCTAGGAATGGTAGAGAGTACCATGATGCAGTTTATGTTAGTCTGGACGGACACACACACTGGTCAATCACCTTGGCCTACAAAAGGCTTAAAGAGTATTATGAAGCTGGTAATGGTGAAGGTAAGGCATATGGGCCAGGCTTCAAATTTACACCAATAGCAGCAGAGGATTTCCAAATACTCACTAAGGTAATTAAAAAGCAAAGAAATGGGAAAGTTAAATCAGTAAAGAAAGGGGGAAAGGGTGGGAACAAAAACAAAGAAAGGTCAGGTTCTGGTGCAGCCGTGGGTAAGTCAGTGAAGAGGAAAATGAAAAGGAAACGGTCACCTGGAGACATAGATTCTATATCACCGAACAGGATGCCAGTTCTTGTGAGGGACCATAAGCGACACAAAACACAAAATAAGCTGCGAAGTGGTCCATTGGTTCGTAATGCTAAGGAGATAGATTCAGAAACTGAGGGATATGTACTGTACAGTGGAAAAAGAACTTTGCTTGCCTGGATGATTGATTTGGGCACAGTCCTTCTAAATGGGAAGGTTCATTATAAAGCACCCGAAGATAAAAGTGCAGCACTGGAGGGTAAGATCACAGGAGATGGCATTCATTGTGGCTGCTGTGATAAAATCATTACAATTTCAGAATTTGAAGTTCATGCAGGAAAAAAATTTGCTGATCCCCTTCAAAATATATATGTGGAGGAAGGAAAGTCTCTTTTACAGTGTTTGCTAGATTCGTGGAATAAGCAAGATGAATCTGAACGTCGTGGTTTTCATTTTGTTGATGTTGCGGGTGAGGATCCGAATGATGATACTTGTGGGGTCTGTGGAGATGGTGGAGACCTGATATGTTGTGATGGTTGCCCGTCAACATTCCATCAAGACTGCTTGGATATACAAAAGTTTCCATCTGGTGATTGGCACTGCATTTATTGCTGTTGCAAATTTTGTGGGTCAGTTAATGGATGTTCAGACCAAAAGGATAGTGATGATGATCTTACCGTGTCAAAATTACTCACGTGCCGACTATATCACAGATCCTGCATTGAGGCAAATGATTGCAATACTATTGATGACAGTGATGTGATCTTTTGTGGAAACAGATGTCAAGAGTTATCTGAGGGACTTGAAATGCTCCTGGGGGTTAGACATGAAATTGAAGATGGGTATTCCTGGACTTTTATTAGGCGGTCAGATGCTGGTATTGATACTTCTCAGATAAAACCTCATATGGTTGAATGTAATTCTAAGCTCGCTGTTGCATTATCAATAATGGATGAGTGCTTCATGCCATATATTGATCATAGAAGTGGGATCAACCTGATCCACAGTATTCTGTATAACCGTGGGTCAAATTTCAATCGTCTCAACTATAGTGGATTTGTTACTGCAATTCTAGAGAGAGGTGATGAGATGATTTGTGCTGCATCTATCAGGATCCATGGGAACCAACTAGCAGAGATGCCATTTATTGGAACCCGCTATATGTACAGGCGACAAGGAATGTGCCGTAGGCTTCTAAATGCCATTGAGTTGGGACTGAGCTCTTTAAATGTTGAGTTATTAGTGATACCGGCTATCTCAGAGCTCAGAGAAACTTGGACTTCCGTTTTTGGGTTTGAGCCACTTGAATCAACAATCAAGCAAACCGTACATAATACAAATCTATTGGTATTTCCTCATGTAGATATGTTACAGAAGAAGATATCAAAACATGAATTGGCTGGTCATAATCCAATTCCTTCAGAAGCTGTCAATCTTCGAACCAATCAAATAGCAAACAATTGCAATGGAGTGGGATCATCTGGATCTGATTTGGTCAATTATATTGAGATTCCTCGCTGCCTTAATACATGCCAAATAAAGGACGAAGCCACATCTATTGAATCTGATTGTCATCTTCCTGAGGGTTCATTGAATAATGTACCTGACATTACTAGCAACATTAATGGTTGTAGGCAATCTACTAAACATGACACATGTGAAGTTGTTTGTAACAAAGGTGATGAGAATCCAGTGATGGGCAAAACTATGAAAAATGCCTGCGAATATGTGACTGATACTCGTGGTGTAGCTGGAGATAGCCAGTTGAACAATGGCACGGTTCCTTACGAGGAAAGACTATGTCTCACATCTTGTATTAACACTGAGGCTACAGAAGGACAATGTATTAACACTGAGGCTACAGAAAACTTACCTAATCATGTCGCAGTATCAAATGAAGTTATGTCAAATAACAAAACTGCGGAAGACTCGGAACCCTGCGGTACAGAAAGTATTACAAGGGATTCAAAACTTTCTGCTGACTCTATTCACCCGGATTCATATATAGTTTCTGACAGTTGTGAACGGAGAAGTGACACTGATTGTGGTCAACCGAATTTCATAGGAACAGAAGAAAAACGTGGTGAATTTATTAGTGTTTGTGGTTCTCATGGTAGACCCAATGGCGATTGTGCCTCTGGTGAAGGTGCTGCCGCCACTAACGTGTTGTTGCACCTTCCATCACAGGACATGACCAATAACAAGCCTTGGGTGAAAGGGTCTTCTTCAGAGTTACCTGAGCCTGATTTGCAGGTGGATCAAACTGAACAAAACAGTGCTCCCTCCCCATGGAGCCCTAACACCTGTGCATCTACTGGCAGTGCTTCTCGTGGTAGTACTGAGGGGATATTTTTGTCAAACCAAGCCAGTTGA 3696 0.4232 MREGLRSRARLGTVSGGEEVVTKKKVVVKSEAVAKDGEGLEVQNSTVEKKVEVARDVKEECGFDLNVSASGEVDLEENGSGKGCFSGGGDIVVAEVDKKAKKEQGSNNEGLVGGRVLRSRSKGGKDRRVYYGENEDVVSESDRECSGVESVKVKTECEEAGEFLGDSYENEKTKVKKAENGTGNLKRKRGRPPKIKLEVEDQPVHQLPRKRGRPPLASKQNHVVVPNRKEKAVLRKDKKVLTMKHDANVNAIDDADSRKSAGDELEKKEVSPVKKSKFTKALETGNNVVASPVRSNTENALVTEKNGRNRFKQLVRDQIKEILSAAGWTVDYRPRNGREYHDAVYVSLDGHTHWSITLAYKRLKEYYEAGNGEGKAYGPGFKFTPIAAEDFQILTKVIKKQRNGKVKSVKKGGKGGNKNKERSGSGAAVGKSVKRKMKRKRSPGDIDSISPNRMPVLVRDHKRHKTQNKLRSGPLVRNAKEIDSETEGYVLYSGKRTLLAWMIDLGTVLLNGKVHYKAPEDKSAALEGKITGDGIHCGCCDKIITISEFEVHAGKKFADPLQNIYVEEGKSLLQCLLDSWNKQDESERRGFHFVDVAGEDPNDDTCGVCGDGGDLICCDGCPSTFHQDCLDIQKFPSGDWHCIYCCCKFCGSVNGCSDQKDSDDDLTVSKLLTCRLYHRSCIEANDCNTIDDSDVIFCGNRCQELSEGLEMLLGVRHEIEDGYSWTFIRRSDAGIDTSQIKPHMVECNSKLAVALSIMDECFMPYIDHRSGINLIHSILYNRGSNFNRLNYSGFVTAILERGDEMICAASIRIHGNQLAEMPFIGTRYMYRRQGMCRRLLNAIELGLSSLNVELLVIPAISELRETWTSVFGFEPLESTIKQTVHNTNLLVFPHVDMLQKKISKHELAGHNPIPSEAVNLRTNQIANNCNGVGSSGSDLVNYIEIPRCLNTCQIKDEATSIESDCHLPEGSLNNVPDITSNINGCRQSTKHDTCEVVCNKGDENPVMGKTMKNACEYVTDTRGVAGDSQLNNGTVPYEERLCLTSCINTEATEGQCINTEATENLPNHVAVSNEVMSNNKTAEDSEPCGTESITRDSKLSADSIHPDSYIVSDSCERRSDTDCGQPNFIGTEEKRGEFISVCGSHGRPNGDCASGEGAAATNVLLHLPSQDMTNNKPWVKGSSSELPEPDLQVDQTEQNSAPSPWSPNTCASTGSASRGSTEGIFLSNQAS 1231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01619 1231 MobiDBLite consensus disorder prediction 402 452 - -
Vimu3g01619 1231 ProSiteProfiles Zinc finger PHD-type profile. 603 648 IPR019787 -
Vimu3g01619 1231 MobiDBLite consensus disorder prediction 99 124 - -
Vimu3g01619 1231 PANTHER PHD FINGER PROTEIN 12 295 1097 IPR042163 GO:0003714|GO:0045892
Vimu3g01619 1231 MobiDBLite consensus disorder prediction 1169 1231 - -
Vimu3g01619 1231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 595 670 IPR013083 -
Vimu3g01619 1231 SMART AT_hook_2 208 220 IPR017956 GO:0003677
Vimu3g01619 1231 SMART AT_hook_2 186 198 IPR017956 GO:0003677
Vimu3g01619 1231 SMART PHD_3 605 646 IPR001965 -
Vimu3g01619 1231 MobiDBLite consensus disorder prediction 1079 1099 - -
Vimu3g01619 1231 ProSitePatterns Zinc finger PHD-type signature. 606 645 IPR019786 -
Vimu3g01619 1231 Pfam Tify domain binding domain 528 577 IPR032308 -
Vimu3g01619 1231 MobiDBLite consensus disorder prediction 1188 1231 - -
Vimu3g01619 1231 CDD PHD1_AIRE 606 645 - -
Vimu3g01619 1231 MobiDBLite consensus disorder prediction 174 217 - -
Vimu3g01619 1231 MobiDBLite consensus disorder prediction 1079 1101 - -
Vimu3g01619 1231 SUPERFAMILY FYVE/PHD zinc finger 595 646 IPR011011 -
Vimu3g01619 1231 MobiDBLite consensus disorder prediction 193 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01619 Vimu-Chr3 30150553 30158079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01619 106 908 PHD Transcription Factor Family AT5G36670 39.492 0.0 569
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01619 - - gmx:100784172 1574.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01619 3 30150553 30158079 Vimu3g01619 3 30150553 30158079 ECH
Vimu6g02802 6 24632168 24635420 Vimu3g01619 3 30150553 30158079 PCT