Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01616 ATGCCAAACACAAGAAATCTGAGGCACCTCAACCTCAACATGTGCTGCTCAAACTCAGCTACTCCTGACTCAGAAACTCCTCCATTGAGTCCTATTACTACTTGTTCACATCACCACACGAACTCTGCATCTCCTTCTTCTTCCATTATGATAAAGAACTTTAACTCTATCTATGACCCTACCTTAACCTCTAACAACTCTTTCACCTCCACTTTCTTCTCCACCACCACCACCTTCTTAGAACCAGAACCTCAACCTCAACCCGCCGACTTCGCCACCGCTTTCGCTTCCCAAAGGTTCTTTTTCTCCTCTCCCGGCCACTCAAACTCCCTCCTTCAATACACTAACAAACCTACTCAACACCACTCACCGTCGCTCACACAAGATGCTGCTCATGTTGAGAAGATCAAGATGACTAAGAAGGTGTTGTTCAAGGGCAGCGTGGCGGTGGCGACCTACTCGCCGGACCCTTACGTCGATTTCCGGCGCTCGATGCAGGAGATGGTGGAGGCGCGTCCGGAGCTCATGGACGTGAAGTCGAACTGGAATGTGTTGCACGAGCTTCTTCTCTGCTATCTTGCGCTCAACCCAAAGAACACCCACAAGTTCATTCTTGGTGCTTTTGCTGATCTCCTCGTTAGCCTCATGTCTTTCTAG 657 0.4932 MPNTRNLRHLNLNMCCSNSATPDSETPPLSPITTCSHHHTNSASPSSSIMIKNFNSIYDPTLTSNNSFTSTFFSTTTTFLEPEPQPQPADFATAFASQRFFFSSPGHSNSLLQYTNKPTQHHSPSLTQDAAHVEKIKMTKKVLFKGSVAVATYSPDPYVDFRRSMQEMVEARPELMDVKSNWNVLHELLLCYLALNPKNTHKFILGAFADLLVSLMSF 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01616 218 ProSiteProfiles OVATE domain profile. 150 214 IPR006458 -
Vimu3g01616 218 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 37 215 IPR038933 GO:0045892
Vimu3g01616 218 Pfam Transcriptional repressor, ovate 154 215 IPR006458 -
Vimu3g01616 218 NCBIfam uncharacterized plant-specific domain TIGR01568 148 216 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01616 Vimu-Chr3 30134316 30136771 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vimu3g01616 Ovate 1.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01616 - - aprc:113871147 306.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01616 3 30134316 30136771 Vimu3g01616 3 30134316 30136771 ECH
Vimu6g02800 6 24619076 24620122 Vimu3g01616 3 30134316 30136771 PCT