Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01599 ATGGGTAGTGTAGATCACCATCAGAGCGTGCAGCAGCAGCGGCACCAAGTAGAGGTTCCTCCACCTCAACCCTTTTTCAACTCTCTAAAGATCTCCTTCAAGGAGACTTTCTTCCCAGATGACCCTTTCAGACAGTTCAAAAACAAGCCATCTTCTAAAAAGATCATGCTTGCTATTCAGTATTTCTTCCCCATCTTCCAATGGGCACCCAAATACACCTTCAACTTCTTCAAAGCTGACCTCATAGCTGGCATCACCATAGCTAGCTTGGCCATTCCTCAAGGCATCAGCTATGCCAAGCTCGCCAACCTCCCTCCTATCCTCGGACTATATTCAAGCTTTATACCACCTTTGATTTATGCCATGATGGGAAGCTCCAGAGATTTGGCTGTGGGGACGGTGGCGGTTGGATCGCTTCTGATGGGTTCCATGTTGAGTGATGTGGTTAATCCTAACGAAGACCCACGGCTTTACCTACACCTTGCCTTCACTGCTACATTATTTGCTGGAATTTTTGAGGCTGCTTTGGGTTTCTTTAGGTTGGGGTTGATAGTTGATTTTCTATCACATGCAACCATAGTAGGGTTCATGGGTGGAGCAGCTACAGTGGTTTGTCTGCAGCAACTAAAATCGATTCTGGGCCTTGTGCATTTCACCCATGGAGCTGATATCATATCAGTGATGCGCTCTGTTTTCACCCAAACGCATGAGAGCAAAAAACGACCAAGGTTTTTCTGGGTGTCAGCAATGGCGCCGTTAACATCGGTTATATTGGGAAGTCTGTTAGTTTATTTCACTCATGCTGAGAGGCACGGAGTTGAAGTGATAGGAGAATTGAAGAAGGGTTTAAATCCACCATCAGTATCAAAGCTTGTTTTTGTGTCACCTTATATCACCACAGCTGTGAAAACTGGCATTGTTGTTGGCATCATATCACTGGCAGAAGGAATAGCAGTGGGAAGAAGCTTTGCAATGTATAAAAATTACAATATTGATGGCAACAAAGAGATGATAGCTATGGGTACCATGAACATAGTTGGTTCTTTCACCTCTTGCTACATCACAACAGCCGTCAACTACAATGCTGGATGCAAGACAGCAGCTTCCAACATTATAATGTCAATAGCAGTGATGTTGACATTGCTATTCCTAACACCCTTGTTCCATTACACACCCCTGGTGGTGTTGTCAGCCATTATTGTATCTGCAATGCTTGGCCTCATAGATTATGAAGCAGCCATCCATCTCTGGAAGATTGATAAATTTGACTTTGTTGTGTGTATGAGTGCATACATTGGCGTGGTCTTTGCCAGTGTTGAAATTGGCTTAGTCATAGCTGTTGCAATTTCTGTACTTCGAGTACTGCTTTTCATTGCAAGGCCAAGGACATTCGTTTTAGGAAACATTGCAAATTCTGGGATTTACAGAAATGTTGAGCAATATCCAAATGCAAAGCATGTTCCTGGAATCCTCATCCTAGAAATTGATGCACCGATTTACTTTGCCAATGCAGGCTATTTAAGAGAAAGGATCACAAGGTGGGTTGATGAAGAAGAAAGCAGAATCAAAGCTACTGGAGAGACAAGTTTGCAGTATGTTATAATGGATATGAGTGGTGTTGGAAACATTGATACAAGTGGAATAAGTATGCTTGAAGAGGTCAAGAAGATTACTGAGAGAAGAGAACTTCAACTTGTTTTGGTGAATCCTGGAAGCGAGGTGATGAAGAAACTGAACAAATCCAAGTTCCAAAATCATCTAGGAGAGAGATGGATCTATTTAACTGTGGAAGAGGCCGTTGGAGCATGCAACTTCAATCTCCATGAAAGAAGGAATCTGAAGAACGATGAATCAGAGGGTTGGAACAATGTTTGA 1875 0.4283 MGSVDHHQSVQQQRHQVEVPPPQPFFNSLKISFKETFFPDDPFRQFKNKPSSKKIMLAIQYFFPIFQWAPKYTFNFFKADLIAGITIASLAIPQGISYAKLANLPPILGLYSSFIPPLIYAMMGSSRDLAVGTVAVGSLLMGSMLSDVVNPNEDPRLYLHLAFTATLFAGIFEAALGFFRLGLIVDFLSHATIVGFMGGAATVVCLQQLKSILGLVHFTHGADIISVMRSVFTQTHESKKRPRFFWVSAMAPLTSVILGSLLVYFTHAERHGVEVIGELKKGLNPPSVSKLVFVSPYITTAVKTGIVVGIISLAEGIAVGRSFAMYKNYNIDGNKEMIAMGTMNIVGSFTSCYITTAVNYNAGCKTAASNIIMSIAVMLTLLFLTPLFHYTPLVVLSAIIVSAMLGLIDYEAAIHLWKIDKFDFVVCMSAYIGVVFASVEIGLVIAVAISVLRVLLFIARPRTFVLGNIANSGIYRNVEQYPNAKHVPGILILEIDAPIYFANAGYLRERITRWVDEEESRIKATGETSLQYVIMDMSGVGNIDTSGISMLEEVKKITERRELQLVLVNPGSEVMKKLNKSKFQNHLGERWIYLTVEEAVGACNFNLHERRNLKNDESEGWNNV 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01599 624 SUPERFAMILY SpoIIaa-like 483 603 IPR036513 -
Vimu3g01599 624 PANTHER SULFATE TRANSPORTER 26 611 IPR001902 GO:0016020|GO:0055085
Vimu3g01599 624 CDD STAS_SulP_like_sulfate_transporter 481 596 - -
Vimu3g01599 624 FunFam Sulfate transporter 31 460 606 - -
Vimu3g01599 624 ProSitePatterns SLC26A transporters signature. 106 127 IPR018045 GO:0008271|GO:0008272
Vimu3g01599 624 Pfam Sulfate permease family 77 429 IPR011547 GO:0016020
Vimu3g01599 624 ProSiteProfiles STAS domain profile. 480 603 IPR002645 -
Vimu3g01599 624 MobiDBLite consensus disorder prediction 1 18 - -
Vimu3g01599 624 MobiDBLite consensus disorder prediction 1 23 - -
Vimu3g01599 624 Gene3D STAS domain 460 606 IPR036513 -
Vimu3g01599 624 Pfam STAS domain 481 599 IPR002645 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01599 Vimu-Chr3 29888138 29893429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01599 12 611 Inorganic Solute Cotransporters AT4G02700 63.434 0.0 820
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01599 K17471 - gmx:100810196 1098.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01599 3 29888138 29893429 Vimu3g01599 3 29888138 29893429 ECH
Vimu6g02787 6 24486809 24493579 Vimu3g01599 3 29888138 29893429 PCT