Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01597 ATGGAGCAGTATGAGGTTCTAGAACAGATTGGAAGAGGCTCCTTTGCTTCTGCTCTACTTGTCAGACACAGGCACGAAAACAAAAGGTATGTTCTTAAGAAGATCCGGCTTGCCCGCCAGACTGATAGAGTACGCAGATCTGCTCACCAGGAGATGGAGCTTATCTCTAAAGTTCGAAACCCATTTATCGTGGAGTATAAAGATTCCTGGGTAGAAAAGGGTTGTTTTGTATGTATCGTCATTGGTTATTGTGAGGGCGGAGATATGACTGAAGCTATTAAAAAGGCCAATGGCGTACATTTTCCTGAAGAGAGACTCTGTAAGTGGCTGGTTCAACTGCTGATGGCACTTGATTACTTGCATGCAAATCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCAAGATATACGTCTAGGTGACTTCGGCCTGGCTAAAATGTTGACATGCGATGATCTTGCATCCTCGGTTGTTGGCACTCCGAGTTATATGTGCCCTGAACTTCTTGCTGATATACCCTATGGCTCTAAATCAGATATCTGGTCTTTGGGATGCTGTGTGTATGAAATGGCTGCTCACAAACCAGCTTTCAAAGCTCTTGATATGCAAGCACTAATCAACAAAATAAACAAGTCATTAGTGGCTCCATTACCAACAGTGTATTCTGGTTCTTTGATTAGATCCAATCCAAGTGCCAAACCCAAATCTCTATTTGAATTGATAATCGAGAAAAAGGAAAAAAGAGGACAGGAATACAGAAAACAGAACATTGAACATGGCAGGTCTCAGAGGCCAAATTCAATTCCTTGGCACTTACCTGTTGTGCCCACCGAGAACCTTAGTTCCTTAGATGTTCCTAACCCAAACAATCGGGGGCTCGTTAAGAGTATGCTGCGGAAGAATCCAGAGCTTCGGCCCAGTGCGGCAGAGTTACTAAATCATCCGCATCTTCAACCTTACATTCTTAAAATTCACTTGAAATTAAATAACCCTAGAAGAAGTACTTACCCATTCCAATGGTCTGATTCAAACTATGTAAGGAGGACTCGGTTTCTAGAGACGGATTCTGTTTCTACTCTTTCTGGAAGAGGTAAAAGATTGTCATTCAGCAATGACAGGGCGTTGAATCCTAGTATTTCTGGAACTGAACTAGGTTCTGTGTGTTCTACTCAAAGAGGTCAAGGATTCTCTACGTGTTCAAAAGAGAAACACTGTGAGCTGTCTGTTGGTTGTGTCCGTGAAGGATGCAATTCCAACAAGTCAAGAGACTCCAAGTCGTCCACTGTTGATAGGGTGCCAAGATTGAGAACAGCTAAAGAATATGCCACTCCCCGAAGGCAGACAATACCATCAAAGACATCCCTTACAGGTTTCAAGCCTGAGTTGCTTCCAGTATCTTCTACTCCTGGTGTTAAATTTACCCCACCATCTCGCAGAGCTTCCCTTCCACTCCCTTCAAAAACCATGTGCATGACCACCCCATATAGAGCTAATGTTGGTCTTCTTCGGGGCATGGTCTCTCCTGATGTTTCTGTCAATGCACCACGAATCGACAAGATTGCTGAATTCCCTCTAGCCTCTTGTCAGGATTCTCTCTTCCCTGTTCATGGAACTTCATCAACCTCGGCTCAGTGTTCTTCTGGTTCCCCAAAGAGTGCCGACTGCTTAATCACGAAAGACAAGTGCACAATCCAAGTTGTGGACAAAGTCAGTGTCCCATCAAGTGTACAATCCCCAAAGAGTGCTGCTCCAGTTTCACATGAATGCTCTGAGCATGCTGTTTCAAGCCACTTCTCTGCCGAGTCTTGCCAGCGCAGGTTTGACCCCTCGTCTTACCAGCAACGTGCAGAGGCATTGGAGGGTTTGCTTGAGTTCTCAGCTCGGCTCCTGCAGCAACAGAGGTTTGAAGAACTTGGGGTGTTGTTGAAGCCATTCGGTCCTGAGAAGGTTTCCCCAAGAGAGACAGCTATTTGGTTGGCTAAGAGCTTCAAAGAAACTGTTGCATGA 2025 0.4449 MEQYEVLEQIGRGSFASALLVRHRHENKRYVLKKIRLARQTDRVRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIVIGYCEGGDMTEAIKKANGVHFPEERLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTCDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMAAHKPAFKALDMQALINKINKSLVAPLPTVYSGSLIRSNPSAKPKSLFELIIEKKEKRGQEYRKQNIEHGRSQRPNSIPWHLPVVPTENLSSLDVPNPNNRGLVKSMLRKNPELRPSAAELLNHPHLQPYILKIHLKLNNPRRSTYPFQWSDSNYVRRTRFLETDSVSTLSGRGKRLSFSNDRALNPSISGTELGSVCSTQRGQGFSTCSKEKHCELSVGCVREGCNSNKSRDSKSSTVDRVPRLRTAKEYATPRRQTIPSKTSLTGFKPELLPVSSTPGVKFTPPSRRASLPLPSKTMCMTTPYRANVGLLRGMVSPDVSVNAPRIDKIAEFPLASCQDSLFPVHGTSSTSAQCSSGSPKSADCLITKDKCTIQVVDKVSVPSSVQSPKSAAPVSHECSEHAVSSHFSAESCQRRFDPSSYQQRAEALEGLLEFSARLLQQQRFEELGVLLKPFGPEKVSPRETAIWLAKSFKETVA 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01597 674 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vimu3g01597 674 SMART serkin_6 4 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g01597 674 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 630 - -
Vimu3g01597 674 ProSiteProfiles Protein kinase domain profile. 4 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g01597 674 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Vimu3g01597 674 SUPERFAMILY Protein kinase-like (PK-like) 1 378 IPR011009 -
Vimu3g01597 674 Pfam Protein kinase domain 4 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g01597 674 Gene3D Phosphorylase Kinase; domain 1 1 78 - -
Vimu3g01597 674 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Vimu3g01597 674 Gene3D Transferase(Phosphotransferase) domain 1 79 338 - -
Vimu3g01597 674 CDD STKc_Nek 3 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01597 Vimu-Chr3 29824409 29829958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01597 1 200 MAP Kinase Kinase Gene Family AT4G29810 32.178 1.27e-29 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vimu3g01597 Pkinase 5.3e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01597 K08857 - msin:131249370 682.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01597 3 29824409 29829958 Vimu3g01597 3 29824409 29829958 ECH
Vimu6g02786 6 24460435 24469945 Vimu3g01597 3 29824409 29829958 PCT