Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01586 ATGGCTCTATCACCTCTATCATCGCTGAATATGATTCCGAAGACTCCGTCGGAGTATCTATCGTTCGCGTTAGGGTTTCTGCTTTGTGCCACAGTCCCTTTCGTTCACGCGGAGTCATCCACGTGCTTGACAGTCTACAAGAACGGCGGTGCTCCGGCGGTGTTTCAGTCTCCAAAATGCCCCCGCTGGAAGCTCTCCGACTACGATTCACCTCCCAAAAGCACGGCGCGTTGCCAGATTGCGATGCTCCAAGGTCACAGAAACTCTCAAGAGGATCGCGCTCTCTGCGTCCTCGATGTTCGCATTCCCTTCCCCAGTGTGGACGGGATCAAGGAGGTTGCGGTTGGCATTGTGGCCGTTTTCGACGGTCATAACGGTGCAGAAGCTAGTGAGATGGCATCGAAACTTTTGTTGGAGTATTTTGTTCTGCATACTTATTTTCTCCTCGATGCTGCCTTTTCTGTTATTTCAAAGACATCAACAGGAGCATGGCTTCACAAGAGAGACCGTGATCATGCAAACTTACTGCATAGATGGAAGGAGATTCTAGGTTCAGAATGGCATGGACTGCATTTTGAAAGGTTTCAGAATACATTTTCTCCAAATTTTGATGATTCTTTTCACTTGGAAATTTTGAAGGAAGCGTTGTTGAGGGCAGTCCATGACATTGATGCTAAATTTTCTGAGGAAGCGTCTAGAAATAATTTTCACTCTGGATCAACAGCTACCATTGTTTTGGTAGCGGATGATAAAATTTTGGTTGCCAATATTGGAGACTCTAAGGCCATATTGTGCTCTAAAAATTTTCAGTCTCCCAAAGAGGCTAAAGACTTATTATTAAAGCTATATAGACAGAAAGAGCATGATGGTTCTGTTTCTATGTGGGATCGTGAAAAGTACAAACTGGCTTCATCCCATGGTCTCACTCATTTTGCAGTAAAGGAATTGACCAGTGATCATCATCCAGATAGAGATGATGAAAGAAATCGGGTGGAAACAGCTGGAGGTCAAGTTCAAAATTGGGGTGGTGTGCCTCGCATAAATGGTCAGCTGGCTATTACACGGGCTATCGGTGACCTACCCTTTAAAAGTTATGGCGTTATATCTGCACCAGAAGTGACTGATTGGCAGCCTCTGACTGCTAATGATAGCTATTTGGTGGTAGCATCGGATGGTGTATTTGAGAAGACAAGCTTGCAGGATGTCTGTGATTTGTTGTGGGAATTGCACAGTTACAGTAACATGAGATCAGAGTGCGCCCATTCTTCCTATTCGTTGGCAGATTTAATTGTTAATAATGCCTTAAAAAAGGGCAGTATGGACAATGTGGCAGCCATTGTCATTCCTCTGGAGTCTGTCAAATCCTCTGCAAACTCGCCTAGGGGAAGTTATATTGGAAAGAGGGATGCTGGTTTCCCATTTGGTGTGCAAGAATCTTCCTTCAAAAGCTCAGGTAATGGCATCTTGTCTGACCTTATGCACTTGGAGCACCCTCATCTGGTAGATACCAAGTTGAAGCGAATATTGGTTGAAGTGAAAGATGCTGATTTTGGCTGCTTTTATTTAGCTGAAAATCTTGATGAACAAGAGGACTCCAAGCGAATTGCCAAAAAAGTTGACTGGGACGACTATTTGTATGAACTACCTCCGCCTCCACCAGATTCCCTTTCTCATCATCCCACTTCAGGGGGTCTTGTCGATTTATACAATAACCAAAACTTTTGCTTTGACTATGGTCCAACTATTAATGAAGCTGGAGACCGATGCATAAATCCTGAAGGCTTTGCTAGTTTCATTGGTCTTCTTGAATCAATTCCTTTGCATGATAATGATTCCAGTAATGGGTCTTCTGATTATTCAATGCCTGATATGAGGTGGGTGGCAAATCTGGGTGGCAAATCTCACCAGGTTTGCACTCCACCCATAGTTGATATGAAATGTCGAACACATCTCATGCCAAGGAATGAATATCTTGAACGTGAGATTTGA 1989 0.4389 MALSPLSSLNMIPKTPSEYLSFALGFLLCATVPFVHAESSTCLTVYKNGGAPAVFQSPKCPRWKLSDYDSPPKSTARCQIAMLQGHRNSQEDRALCVLDVRIPFPSVDGIKEVAVGIVAVFDGHNGAEASEMASKLLLEYFVLHTYFLLDAAFSVISKTSTGAWLHKRDRDHANLLHRWKEILGSEWHGLHFERFQNTFSPNFDDSFHLEILKEALLRAVHDIDAKFSEEASRNNFHSGSTATIVLVADDKILVANIGDSKAILCSKNFQSPKEAKDLLLKLYRQKEHDGSVSMWDREKYKLASSHGLTHFAVKELTSDHHPDRDDERNRVETAGGQVQNWGGVPRINGQLAITRAIGDLPFKSYGVISAPEVTDWQPLTANDSYLVVASDGVFEKTSLQDVCDLLWELHSYSNMRSECAHSSYSLADLIVNNALKKGSMDNVAAIVIPLESVKSSANSPRGSYIGKRDAGFPFGVQESSFKSSGNGILSDLMHLEHPHLVDTKLKRILVEVKDADFGCFYLAENLDEQEDSKRIAKKVDWDDYLYELPPPPPDSLSHHPTSGGLVDLYNNQNFCFDYGPTINEAGDRCINPEGFASFIGLLESIPLHDNDSSNGSSDYSMPDMRWVANLGGKSHQVCTPPIVDMKCRTHLMPRNEYLEREI 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01586 662 SUPERFAMILY PP2C-like 75 452 IPR036457 -
Vimu3g01586 662 CDD PP2Cc 84 450 IPR001932 -
Vimu3g01586 662 ProSiteProfiles PPM-type phosphatase domain profile. 77 450 IPR001932 -
Vimu3g01586 662 SMART PP2C_4 69 448 IPR001932 -
Vimu3g01586 662 Gene3D - 73 457 IPR036457 -
Vimu3g01586 662 PANTHER PROTEIN PHOSPHATASE 73 449 IPR015655 GO:0004722|GO:0006470
Vimu3g01586 662 Pfam Protein phosphatase 2C 211 443 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01586 Vimu-Chr3 29701145 29706723 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01586 132 517 PP2C-type Phosphatase Gene Family AT3G63320 47.804 2.10e-111 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01586 - - vum:124828073 1194.1