Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01584 ATGAATTATATATATCCAGTGAAAGAAGAATGCTTTGAATCATCACTACCACCACCATCATCATCATATCAGTTAGGTAATGAGTATCCACCAAAGCCAATTGAGAGACTTCATGACGCTGGACCACCACCATTCCTCACAAAAACTTTTGATGTTGTTGATGACCCAGTTACCAACCACGTAATTTCTTGGAGCAGAGACGGCACAAGCTTTGTGGTCTGGGATCCGCATACCTTCTCTGCAAGTCTCCTTCCCAGATACTTCAAGCACAGCAATTTCTCAAGCTTTGTCAGGCAACTAAACACTTACGGTTTTAGGAAAATTGATCCAGATAGATGGCAGTTTGCAAACGAAGGATTCATCAGAGGGCATAAGCATTTGTTAAAAAGCATAAGGAGAAGGAAGGCACCTTCCCAACTAACACAAAGTCACAGTGTTGAAGTTGGACGTTTTGAATTAGACAAAGAGGTTGATCGTTTGAAGCACGACAAGATAGTGCTGATGATGGAGCTTATGAATCTAAGACAGCAGCAGCAGAAAGCCAGAATGTGCATTAAGGAGATGGAGCAAAGGTTGCAAGTGACTGAAATCAAGCAGAAACATATGATGGCTTTCTTAGCTAGAGCAATAAAAAATCCTGCCTTCATACACCAACTCCAAAAGAAAGAGAAGAGAAAGGATCTTGAAGAAGCCTTGACTAAAAAGAGAAGACAAATTGAGCAAGGAGTTAGAGGTATTGGAGAATCAAGTAGTAGGGGTGTTAAAGTTGAGGCCATGGAATTTGGGGGGTGCGATTGTGATTTTGGAGTGTCAGAGTTGGAAAAGTTAGCTATGGAAATGCAGGGATGTGGAAAGGGTAGGATAGACCGGGAGGTAGAAGAACCTGAGGCACTAGAATCACAAGAGAGACTGGATAGAGTACTTGATGAAGAGTTTTGGGAAGAACTGATGTTCAGTGAGAAATTTGATGGTCGATTTGACATTCCAACTACTGAAGATAACGATGAAGATGTTGTCAACATATTGGCCAATGAACTTGGTTGCTTGGATTCAAGTCATTAA 1062 0.4134 MNYIYPVKEECFESSLPPPSSSYQLGNEYPPKPIERLHDAGPPPFLTKTFDVVDDPVTNHVISWSRDGTSFVVWDPHTFSASLLPRYFKHSNFSSFVRQLNTYGFRKIDPDRWQFANEGFIRGHKHLLKSIRRRKAPSQLTQSHSVEVGRFELDKEVDRLKHDKIVLMMELMNLRQQQQKARMCIKEMEQRLQVTEIKQKHMMAFLARAIKNPAFIHQLQKKEKRKDLEEALTKKRRQIEQGVRGIGESSSRGVKVEAMEFGGCDCDFGVSELEKLAMEMQGCGKGRIDREVEEPEALESQERLDRVLDEEFWEELMFSEKFDGRFDIPTTEDNDEDVVNILANELGCLDSSH 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01584 353 FunFam Heat shock transcription factor 1 38 135 - -
Vimu3g01584 353 PRINTS Heat shock factor (HSF) domain signature 96 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu3g01584 353 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu3g01584 353 PRINTS Heat shock factor (HSF) domain signature 45 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu3g01584 353 SUPERFAMILY "Winged helix" DNA-binding domain 41 134 IPR036390 -
Vimu3g01584 353 Gene3D - 37 135 IPR036388 -
Vimu3g01584 353 Coils Coil 171 191 - -
Vimu3g01584 353 Pfam HSF-type DNA-binding 45 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu3g01584 353 SMART hsfneu3 41 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu3g01584 353 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 31 243 IPR027725 -
Vimu3g01584 353 Coils Coil 218 241 - -
Vimu3g01584 353 ProSitePatterns HSF-type DNA-binding domain signature. 84 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01584 Vimu-Chr3 29687956 29689374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01584 31 352 HSF AT3G22830 48.485 2.18e-108 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vimu3g01584 HSF_DNA-bind 3e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01584 K09419 - gmx:100811945 544.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02780 6 24408956 24410717 Vimu3g01584 3 29687956 29689374 PCT