Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01582 ATGTTCCCTTCAGTTATGTCCAATTCCAATTCCTTGTCTGAAGAGGCCACTGTCTCCTGTGGTACAAGAATCGGTGGACTCAATCACGTAGTCACAACAATCATTTCTCCACAACAGCCTCAAAAGATCAAGAAAAAGAGAAACCTCCCTGGAAACCCCGACCCGGATGCTGAAGTGATTGCTTTATCACCGAAGACTCTTCTAGCTACTAACAGATTTGTGTGTGAGATCTGCAACAAGGGTTTCCAGAGAGACCAGAACCTTCAGCTTCATAGGAGAGGGCATAACCTTCCATGGAAGCTGAAGCAAAGGAACAACAAAGAGGTGAAAAAGAAAGCCTACGTTTGCCCGGAACCTTCATGCGTTCACCACAACCCCTCAAGGGCTCTCGGGGACCTCACAGGAATTAAGAAACATTACTGCAGAAAACATGGAGAGAAGAAGTGGAAATGTGAGAAGTGCTCAAAGATCTATGCCGTTCAGTCTGATTGGAAAGCTCACTCCAAAACCTGTGGTACTAGAGAATATAGATGTGATTGTGGAACCCTTTTTTCCAGGAAGGACAGCTTCATAACTCACAGAGCATTCTGTGATGCATTGGCTGAAGAAAGTGCAAGACTGTCAGCAAACCAACTGGCCACAAGCACCACAAACCCTTTGGTCCAATCCCTCTTCCTTTTCCCAACCCAACAACACAACAACAACAACATCAACACCACCAACTTCATCAATCCCTGGGACCCAAACCCTAACCCTAGCAACCTTCCAAGCCTCCACAACACCATCAAATCTGAATCTCACAACTTCCACACTCCCATCTTCACCAACAACAACAACAACAACATCTCTTCTCCTTCATTGCTTCTTCATCATCCCCCCAAGACCATCATAACCTCACCCTACACTGACCTCCACGTCCGCCCCTCCAACACTGCCACGTCAGCCCACCTCTCCGCTACTGCGCTGCTCCAGAAGGCTGCAACCTTTGGCGCCGCCGCTATCACGGGCCCCACTCACGTCACTCCGCTCAGCATGGCCGAGTTGGGAACCGGATCGACTCAGCTCGACTCGGTGCCACCCGAACGCTACATCAACATTAGGGGCCTCCCGAATAGCGACGGTCTCACCAGGGACTTTCTTGGCCTCACCAATGGCGACGCGGTGAACGTTAGCATCGACGTCAAGGACATGCTAACGTTCACGGGAGGGAGCGTAGAGTACAACCATTACCACCACCAACCCTACGATCACCATCATAATCATAGCAACTCGCTTTTCAAGCCACAGCATGGGTTTGGATTCCTTGGGACAACCACTGGACCCGAATCCTGGGGAAATTGTGAGTGA 1347 0.4981 MFPSVMSNSNSLSEEATVSCGTRIGGLNHVVTTIISPQQPQKIKKKRNLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVKKKAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLATSTTNPLVQSLFLFPTQQHNNNNINTTNFINPWDPNPNPSNLPSLHNTIKSESHNFHTPIFTNNNNNNISSPSLLLHHPPKTIITSPYTDLHVRPSNTATSAHLSATALLQKAATFGAAAITGPTHVTPLSMAELGTGSTQLDSVPPERYINIRGLPNSDGLTRDFLGLTNGDAVNVSIDVKDMLTFTGGSVEYNHYHHQPYDHHHNHSNSLFKPQHGFGFLGTTTGPESWGNCE 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01582 448 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 95 IPR013087 -
Vimu3g01582 448 FunFam protein indeterminate-domain 12-like 52 120 - -
Vimu3g01582 448 Gene3D Classic Zinc Finger 52 121 - -
Vimu3g01582 448 FunFam protein indeterminate-domain 5, chloroplastic-like 127 206 - -
Vimu3g01582 448 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Vimu3g01582 448 SUPERFAMILY beta-beta-alpha zinc fingers 72 169 IPR036236 -
Vimu3g01582 448 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 37 405 IPR031140 -
Vimu3g01582 448 Gene3D Classic Zinc Finger 142 207 - -
Vimu3g01582 448 SMART c2h2final6 73 95 IPR013087 -
Vimu3g01582 448 SMART c2h2final6 114 144 IPR013087 -
Vimu3g01582 448 SMART c2h2final6 149 169 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01582 Vimu-Chr3 29661579 29664587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01582 17 417 IDZ Gene Family AT4G02670 51.174 9.27e-125 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu3g01582 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01582 K25870 - gmx:100780056 719.153