Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01563 ATGAATCACCTACCGTCAAACCTGTTGCCGGACGAAGGAAGCCCGGAGTGGATGAACAAGGGGGACAACATGTGGCAGTTAACGGCAGGCACTCTGGTGGGCCTGCAAAGTGTTCCAGGCCTGGTCATCCTCTATGGCAGCATAGTCAAGAAGAAATGGGCTTTGAACTCTGCGTTCATGGCCCTCTACGCTTTCGCGGTGGTTCTTGTTTGTTGGGTGGGGTGGTGCTACCAAATGTCCTTTGGTGAAAAGATTTTTCCATTTCTGGGACGTCCAAACGTCGCTTTAGACCAACAATTCCTCAGGGACAAAGCTTTTTCTGGAGATTTTCCCAACGCCACTATGATTTACTTTCAGCTCGTCTTTGCTGCCATCACGTTGATTCTCATCGCAGGGGCGTTGCTCGGGAGAATGAACTTCTACGCTTGGATGTTATTCGTTCCACTTTGGGTCACCTTCTCTTACACCATCTGCGCCTTCAGTATATGGAGCACCGATGGATGGTTGTTCAAAATGGGCCTCATTGATTACTCCGGTGGCTTTGTTATTCACCTTTCTTCTGGGATTGCTGGTTTCATCGCAGCATCTTGGGTAGGGCCAAGGACAGTGAAGGATAGAGAGAGGTTTCCTCCAAACAACATACTTCTGATGCTGGCTGGGGCTGGACTACTATGGATGGGGTGGACCGGATTCAACGGTGGAGATCCATACGCAGCCAACATAGATGCATCTCTGGCCGTTCTTAACACCCATGTCTGCACGGCCATGAGTTTGTTGACTTGGCTTTTCCTTGATATCCTCTTCTTTGGAAAACCTTCAGTGATTGGTGCCACTCAAGGCATGATCACTGGTTTGGTTTGCATCACCCCTGCTGCCGGTGTGGTGCAAGGTTGGGCAGCAATGATAATGGGAATTATGTCAGGAAGCATCCCGTGGTACACAATGATGGTCCTCCACAAAGAGATAAGGCTCCTAAAACAGGTGGATGATACCATGGCAGTTTTCCACACTCATGCAGTGGCTGGTTGCTTAGGTGGTATTTTGGCTGGTTTCTTTGCTGATCCTGACCTTTGCCGTCTCTTCTATGGGGTAGAGGATTCAGTGCACTATACGGGCCTTGTTTATGGCATATTCAAAGGAAGGTCTAAGGCAGGGTTGAGGCAAATGGGGGTTCAGCTTCTTGGCATCGTGTTTGTAATAGTTCTGAATGTGACCACAACCAGTATTGTGTGCTTGATTGTTAAGAGCATTGTTCCACTCAGGCTGCAGGAAGATGAGTTGGAAGTTGGAGATGATGCAGTGCATGGTGAGGTTGCATATGCATTGTGGGGTGATGGAGAGAGGCTTGAGACTGCCACTCAGGCTTTGAGTTTTGAGATCAATCGTGAATGGCCCACTCTTGATTTAAAAACTTCCATTGATGCAGAAATGGAGTGA 1437 0.485 MNHLPSNLLPDEGSPEWMNKGDNMWQLTAGTLVGLQSVPGLVILYGSIVKKKWALNSAFMALYAFAVVLVCWVGWCYQMSFGEKIFPFLGRPNVALDQQFLRDKAFSGDFPNATMIYFQLVFAAITLILIAGALLGRMNFYAWMLFVPLWVTFSYTICAFSIWSTDGWLFKMGLIDYSGGFVIHLSSGIAGFIAASWVGPRTVKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYAANIDASLAVLNTHVCTAMSLLTWLFLDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAMIMGIMSGSIPWYTMMVLHKEIRLLKQVDDTMAVFHTHAVAGCLGGILAGFFADPDLCRLFYGVEDSVHYTGLVYGIFKGRSKAGLRQMGVQLLGIVFVIVLNVTTTSIVCLIVKSIVPLRLQEDELEVGDDAVHGEVAYALWGDGERLETATQALSFEINREWPTLDLKTSIDAEME 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01563 478 PANTHER AMMONIUM TRANSPORTER MEP2 6 451 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vimu3g01563 478 Pfam Ammonium Transporter Family 25 440 IPR024041 GO:0008519|GO:0016020|GO:0072488
Vimu3g01563 478 NCBIfam ammonium transporter 22 440 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vimu3g01563 478 FunFam Ammonium transporter 7 443 - -
Vimu3g01563 478 PRINTS Rhesus blood group protein signature 119 135 IPR002229 GO:0005886
Vimu3g01563 478 PRINTS Rhesus blood group protein signature 246 268 IPR002229 GO:0005886
Vimu3g01563 478 PRINTS Rhesus blood group protein signature 301 319 IPR002229 GO:0005886
Vimu3g01563 478 PRINTS Rhesus blood group protein signature 215 233 IPR002229 GO:0005886
Vimu3g01563 478 Gene3D Ammonium transporter AmtB like domains 9 459 IPR029020 -
Vimu3g01563 478 SUPERFAMILY Ammonium transporter 17 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01563 Vimu-Chr3 29443532 29445162 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01563 113 463 Inorganic Solute Cotransporters AT2G38290 59.259 2.99e-142 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01563 K03320 - gmx:112999382 839.336