Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01561 ATGACGACTGGTATAGTACGAGACCAGAACCTGGAGAAACACATTCACAAGCAGATGGGGTGCATGGCTGGCTTTCTTCAGATCTTTGACCGTCATCAGATACTCACTGGAAAACGCATCTATTCCCCCAAACGTCTACCTCCGGCCTCACCGGAGCCTGACAAAGTTACTGCCTCGCCGGCTCGTTCCGTGCAGTCGCCGGCTAGGGAGGTGGTCCAATCCGAACCCAAGGCCAGTTCTCCTGCGCTCCCTGTTCTGGAATTCAAGGAAGGCACGCGATCTTCCTGGAAGTTCTCGCGAGAGGCTCCGAGACTGTCTCTTGACAGCAGAGCCGTGGTAGACGCCAAAGGAACGCTTCACCTTCACACCCGAGAGATCCCCTCGGAGAACGATGGAGACAAGCAGCGTCGTTCCACCAGCGTCATTGCCAAGCTTATGGGCCTGGAGCCCCTGCCCGATTCAGAGCCCGGACCAGGGCCCATAGCAAAGCTGCAGAGATCCGCTTCCGAGTCCAGAGTGTCCAGAGATCTGTCTCTGCCCCTGCCACTGCCACAGTGTCGTTTTCTGGACACAAACAATTTCCCAAGCGCGGTTCAGGTCACCAATGTGGTCCTCGAGAATAATAATGCTGTCATCGATGCCCGATTGAGCAATGGCAGAGCTGCAGATCCACCCAGGCAAAGGGCCAAGAAGAGTTTCTACGACTCGGCGGATTTCTTCCCCGAACCCAAACACACAGCTTCTGTTTACGGGGAGATTGAGAGGAGGTTGCGGATGCGAGGGATTAACGAGCCATCGAAGGATCTCCACACTCTCAAACACATCCTCGAGGCCTTGCAGCTCAAGGGGCTTTTGCATTCCAACGGCAAATCCAATCAATCTCCCATTGTCGTTATGAAGCCTGTCCGATCGATGAACCGGAATGGTAACGATTCTCCTCCCCCTCCCCTCCGGTCCAGTCCTCGCCGGAGGGTTGGGAACGAGAACAGGAGGATTGACCAAAATGAGCGGAGTTCAATGAGTCAAAGCAACAGAGCACTAAGCTTGAGTCCACATAGGAGAAAGCAACAAAACGTGGAACCGCAGAGGAAAGTTGGCGTTGATTCGAGAAGGGGGTCTGTGTCTGTATCTCCGGTTCATTCTCCCAAGGCGAGCCCCAGAAGGAATGCAGGCAATCAGCAGGTGGCATGTGGATCGCCTAGAGTGAGAAGAAATGTGGTGGAGCGTAAGTTGAAAATGCTGGGTGGGGCAGAGGATGAATCGTCTACAGTTTCAGAGAACAGCTTCAGCACCTCTTCATATCTCGATACAGAGGTAGAATACTATACTAAACCAGTGAGTGCAGTGAGGTACAGGTTGGAAGAGTATAAGGAAGGGAAAGATCTGTTGGATAGGTGTGATAAGCTGCTGAACAGCATAGCAGAAATAACAGCAGCCAACGAGTTGCAACCGAGTCCAGTATCGGTTCTAGACTCGTCGTTTGACAAGGACGACTGGTGTTCACCATCCCCAATAACAAAACGATGCATTGATTACAAAGATGGTTTGTCCTCTCCCTCTCCCAAAATCCCAACCAATGTGGACCAATCATTTGATCCCAGGGATGTTGACATGGCATCACTCAGTTGGCTCAGTCACTTACCTCAAAACTGCACTGCGGTGTGCGATCAAGCGGCGGAGTCAGAAGATGATATGTGGAGTGCGGCACTGTGCAGCAGCGAGGAGGCAGCGTCGGAGGATTGCGATTTCGTGTACGTATCGGAGATTCTTCGAGCGTGCAGTTACTTGCCGGAAGAGTGCGACATTTTTCTGTTACTGGAGAAGCAGCAATGCCTGAAAGGAAAGGATACCTCAAAGGCTTCGACGCTGCAGAGGCGGTTGATCTTCGACACTCTCCAGGAGATCCTGGAGCGGAACCAACAGTTGCCGCCGTGGAAGGCGGTGTCGTACGGCGAGCAGAGGCAGAAGATCTGGTCGGAGTTTCGGAGGATCCGAGAGAGGGAAGAATCGGAGTCGGAGGACTTGTTCAAGGTTATATGCGGAGTGTTGAAGAAGGACATGGCGGAGGAGATGCGGGGGTGGGGAGAATGGGCGGTGGAGATGGGAGATGTGGTGTTAGACATTGAACGTCTCGTGTTTAAAGATCTGGTTGGCGAAACCATTCGAGAACTCGCTTCGTTTTCTCCTCATTGTAACAACGACAAGCTACCCGCGCTTCGTAGGAAACTCCTCTTTTGA 2238 0.5268 MTTGIVRDQNLEKHIHKQMGCMAGFLQIFDRHQILTGKRIYSPKRLPPASPEPDKVTASPARSVQSPAREVVQSEPKASSPALPVLEFKEGTRSSWKFSREAPRLSLDSRAVVDAKGTLHLHTREIPSENDGDKQRRSTSVIAKLMGLEPLPDSEPGPGPIAKLQRSASESRVSRDLSLPLPLPQCRFLDTNNFPSAVQVTNVVLENNNAVIDARLSNGRAADPPRQRAKKSFYDSADFFPEPKHTASVYGEIERRLRMRGINEPSKDLHTLKHILEALQLKGLLHSNGKSNQSPIVVMKPVRSMNRNGNDSPPPPLRSSPRRRVGNENRRIDQNERSSMSQSNRALSLSPHRRKQQNVEPQRKVGVDSRRGSVSVSPVHSPKASPRRNAGNQQVACGSPRVRRNVVERKLKMLGGAEDESSTVSENSFSTSSYLDTEVEYYTKPVSAVRYRLEEYKEGKDLLDRCDKLLNSIAEITAANELQPSPVSVLDSSFDKDDWCSPSPITKRCIDYKDGLSSPSPKIPTNVDQSFDPRDVDMASLSWLSHLPQNCTAVCDQAAESEDDMWSAALCSSEEAASEDCDFVYVSEILRACSYLPEECDIFLLLEKQQCLKGKDTSKASTLQRRLIFDTLQEILERNQQLPPWKAVSYGEQRQKIWSEFRRIREREESESEDLFKVICGVLKKDMAEEMRGWGEWAVEMGDVVLDIERLVFKDLVGETIRELASFSPHCNNDKLPALRRKLLF 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01561 745 MobiDBLite consensus disorder prediction 147 169 - -
Vimu3g01561 745 MobiDBLite consensus disorder prediction 59 73 - -
Vimu3g01561 745 PANTHER LONGIFOLIA PROTEIN 3 68 IPR033334 GO:0051513
Vimu3g01561 745 MobiDBLite consensus disorder prediction 41 80 - -
Vimu3g01561 745 MobiDBLite consensus disorder prediction 374 399 - -
Vimu3g01561 745 MobiDBLite consensus disorder prediction 336 355 - -
Vimu3g01561 745 Pfam Domain of unknown function (DUF4378) 582 719 IPR025486 -
Vimu3g01561 745 MobiDBLite consensus disorder prediction 303 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01561 Vimu-Chr3 29407360 29410293 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01561 451 745 TRM (TON1 Recruiting Motif) Superfamily AT3G63430 41.667 3.47e-61 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01561 - - gmx:100777397 1030.39