Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01550 ATGACGATGAAGAGGCTGGCGAGAGTGAAGAGGGATGCGATTGCAGCATGCATGACTTGCCCGCTTTGCAACAAGTTCCTCAAGGAGGCCACTGCCATTTCTCTTTGCCTTCATACGTTGTCATCTGAATTTTCTCAAATTTTGATTCTTTCCTCATTTTCCATTCATGGGGCTTGTTCCGGTTTTTGCGTTGTTCATTTGGGTTTGTTGCTTGTTATACTCAAGATGGGGAAATTTTATGCAGTTTGCAGGAAGTGCATTTATGATAAAATTACAGATGAAGAATTGGAAAATTGTCCAGTATGCAACATTGATTTGGGCATTGTTCCGCTGGAGAAAATGAGGCCAGATAACAGTTTGCAAGATTTAAGGAACAAAATTTTCCCTTTCAATAAAAGAAAGCAGAAGGCACCTGTAGCCATGCCTTCAGTACTATTACCAGCTAGAAGAAAGGAAAGATCACTTTCATCTTTGGTTGTCAGCACTCCAAGGGTATCATCTACACAATCAACCATGACAGGAAGAAGGACAAAACCTACAAGAAAGGCACTAGGCCTGCAGGGCTCTGGTTTCTCTGTTGAAAAGCTCATTAAAAAAGAAGAGGAATTACTGGAAGATCGCCAAGATAGTTCATGCTCACCTGACACTTCAAACAAGTCTGCAAAGAGTGTGGGACAGAGTTTGTCACCTTGTAAAAATAGTCAATCCATATGCAATAGAGGACTGCAGAATGGTGCTGAAACACAGGAAGCAAAATGGGATCTTTGGAAAACTTTGAATTATTTAGCAGAGGCTGCAAGTAGGAGTAAGTCTTTCAAGTCTAATGTGCAATCGTCTAATGCTAAACCAGAATCCGTGAAAGTAAATGACAGCGATAATAAAGTGCTGAAATCCAAACTTGAGGAAAATAAGCGCAAGGCAAAAGTTGAAGATGAAAAGATTAGCACTGATCATGTCTCTCCAGATACAGCAAAACCCAACAAACTGCGAAGAGTTCGCCCAAAAAAGGAACCTGTTTTTGGAGAATCTAGAATATCCCCTCAGGCTGTTCTGGATGCTAATGACAGTAACCTCTTATGGAATGACTCAATTTGGTTCTCCTTAGCAGCTTCTGAAAACCAGGAAGGAGATGCACCTTTACCCCAAATTCCTTCAAGTTATGTAAGAATAAAGGACGGAAGCATACCTGTCTCATTTATCCAAAAGTTGTTAATGAAGAAACTGGGCCTGAAAAGTGAGGACGAGGTGGAGATCAAATGCATGGGACATCCTGTGCTTCCTTCACTACAGGTACAGAATTTAGTTGAATTGTGGCTTGATACGGCATCTACAGGCCACAGAATTCCTGCAACCATAGGATCCTCAGGGAAAGATTTTGTGATGATCCTAACCTATGGTCGGAAGGTCCAACAATCTTGA 1419 0.4137 MTMKRLARVKRDAIAACMTCPLCNKFLKEATAISLCLHTLSSEFSQILILSSFSIHGACSGFCVVHLGLLLVILKMGKFYAVCRKCIYDKITDEELENCPVCNIDLGIVPLEKMRPDNSLQDLRNKIFPFNKRKQKAPVAMPSVLLPARRKERSLSSLVVSTPRVSSTQSTMTGRRTKPTRKALGLQGSGFSVEKLIKKEEELLEDRQDSSCSPDTSNKSAKSVGQSLSPCKNSQSICNRGLQNGAETQEAKWDLWKTLNYLAEAASRSKSFKSNVQSSNAKPESVKVNDSDNKVLKSKLEENKRKAKVEDEKISTDHVSPDTAKPNKLRRVRPKKEPVFGESRISPQAVLDANDSNLLWNDSIWFSLAASENQEGDAPLPQIPSSYVRIKDGSIPVSFIQKLLMKKLGLKSEDEVEIKCMGHPVLPSLQVQNLVELWLDTASTGHRIPATIGSSGKDFVMILTYGRKVQQS 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01550 472 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 144 IPR013083 -
Vimu3g01550 472 MobiDBLite consensus disorder prediction 270 286 - -
Vimu3g01550 472 MobiDBLite consensus disorder prediction 157 185 - -
Vimu3g01550 472 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 5 469 IPR044807 GO:0004842
Vimu3g01550 472 MobiDBLite consensus disorder prediction 270 338 - -
Vimu3g01550 472 MobiDBLite consensus disorder prediction 210 233 - -
Vimu3g01550 472 MobiDBLite consensus disorder prediction 157 177 - -
Vimu3g01550 472 MobiDBLite consensus disorder prediction 204 233 - -
Vimu3g01550 472 MobiDBLite consensus disorder prediction 287 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01550 Vimu-Chr3 29263695 29268679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01550 1 391 C3H Transcription Factor Family AT2G30580 42.386 2.50e-83 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01550 K16277 - gmx:100778462 719.153