Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01541 ATGAACTTAAATACCATTCTAAATGTGAACAAGAAAGCAACAAGCATTGCAATTGTTGGGATCGTCTTTCCCATACTCGTTGCACCATGCTTGTATGCTTTATTTCAAAAAGTTTATGGACATGTTATGATGTTTCCCCTTGAGGAAAATACAAATAATGCTTATATACTTTGGACTTTAATTCTTACTGTTACAAGTTTTGCTGTGGTAGCACACACACTTTTTGAGCTTAAGCTCCTTTATACTGGTCTTGGCAAAGAGGCTTTAACAACAACCATGATTGGTGACACCTATGGTTGGATTCTTTTTACTTTATTTGTTCCCTTTTCAATTAATGGTAAAGGAGCCATCTACACTCTGTTATGCACGATAATATTCATTGTTGTGTGCATCTTTGTGGTACGTCCACTCATTCAATGGTTTATTGATCGCAAGGCAAACAAAGATGAATGGAATGATAACCAATTGCTCTTCATAATCATGGGCGTTTTACCTTATTCATGTATTTCAAATTTTCTTGGTGCATATGCCATTGTTGGGGCTTTTATTTTTGGATTAATTTTACCTCATGGAAAATTTTCTGAATTGGTCATGTCAATTTCAGATGACCGTGTTAGCGGCTTTTTAGTACCCCTCTTCTTTAGTGAAACTGGAATGAGACTTATGTCACAAGAAGAGTTAGAAAGCATTCACAATACATTTGATGCACTTGGAGAGGCATATAATGTTATTAGAGTTGAGACCTTAAATGCGATGTCAGCATATACAACTATTCATGAGGACATATACCACTTAGCAGAAGAGAAATGCACAAGCTTAATTCTTCTTCCATTTCACAAACAATTAACTTTAGAAGGTACTCTAGAAGGAACCAGTGTTGTATACAAAGATATAAATCAAAATGTAATGCAATGTGCTCCTTGCTCCGTGGGAATATTTGTTGATCGTGATTTTGGGTTAGTTCCCAAAATGAACCTTCATATTCGTGTGGTCTTTGTTGGGGGTCCTGATGATCGTGAAGCCTTAGCCATTGCATGGAGGATGGCAGGACGTTCAGGAACACAACTCTCACTTGTTCGAATTCTTCTATTGGGTGAAGCGGCAAAAGTATATGCTTCAGTTCACAATGCATCACAAGGGATATTATCTACAGTAATAGATACAGACAAGCAAAAAGAGTTAGATGAAGAGTATATAGAACTTGGAGTTATTGGGGATATTTTGGTGTCAAACAATTTTGGTTCACGCTCGTCTATGCTAGTTGTTCAACAATATGGATATGGAGGAATG 1290 0.3674 MNLNTILNVNKKATSIAIVGIVFPILVAPCLYALFQKVYGHVMMFPLEENTNNAYILWTLILTVTSFAVVAHTLFELKLLYTGLGKEALTTTMIGDTYGWILFTLFVPFSINGKGAIYTLLCTIIFIVVCIFVVRPLIQWFIDRKANKDEWNDNQLLFIIMGVLPYSCISNFLGAYAIVGAFIFGLILPHGKFSELVMSISDDRVSGFLVPLFFSETGMRLMSQEELESIHNTFDALGEAYNVIRVETLNAMSAYTTIHEDIYHLAEEKCTSLILLPFHKQLTLEGTLEGTSVVYKDINQNVMQCAPCSVGIFVDRDFGLVPKMNLHIRVVFVGGPDDREALAIAWRMAGRSGTQLSLVRILLLGEAAKVYASVHNASQGILSTVIDTDKQKELDEEYIELGVIGDILVSNNFGSRSSMLVVQQYGYGGM 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01541 430 Gene3D - 1 230 IPR038770 -
Vimu3g01541 430 Pfam Sodium/hydrogen exchanger family 1 222 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vimu3g01541 430 PANTHER CATION/H + ANTIPORTER 393 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01541 Vimu-Chr3 29195169 29197297 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01541 204 401 Antiporter Super Family AT2G13620 37.073 8.22e-40 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01541 - - var:108320251 395.971