Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01538 ATGGAAGCTGGCCTCATGAAGGAGAAAATGGTGTTTGAGGAAACTGAACTCAGGCTGGGACTTGGACTTGGACTACCTGGAAATGGAGCCACAGCAACTGAACCAGCGGCAGCAGAAGGAGTTAGGAAGAGAGGCTTCTCTGAAACTGAGACTGAAACAACCACTGTTGATTTGAAGCTTAACCTCTCCCCAAAGGAACTTTCTTCTGCTGATGGAACAGATCCACGTAATAAGCCAAACACTTCACCTAAGGAGAAAACCCTTTTGCTTCCCGATCCCTCCAAGCCTCCTGCTAAGGAGCAAGTTGTGGGATGGCCACCAGTGAGGTCTTTCAGGAAGAACATGTTTGCAGCACAAAAGAACATGGGAGAGGAAAGTGAGAAGAACAGCCCTAATGCAAGCTTTGTGAAAGTTAGCATGGATGGAGCACCATATCTCCGGAAAGTGGACTTGAAGATGTACAAGAGTTACCCAGAACTCTCTGATGCCTTGGGAAAAATGTTTAGCTCCTTCACCATTGGGAATTGTGAATCCCAAGGCTTTAAGGATTTCATGAATGAGAGCAAGTTGATGGATCTTTTGAACAGCTCCGACTGTGTCCCAACCTATGAAGACAGGGATGGTGACTGGATGCTTGTCGGTGATGTTCCATGGGAGTAA 660 0.4682 MEAGLMKEKMVFEETELRLGLGLGLPGNGATATEPAAAEGVRKRGFSETETETTTVDLKLNLSPKELSSADGTDPRNKPNTSPKEKTLLLPDPSKPPAKEQVVGWPPVRSFRKNMFAAQKNMGEESEKNSPNASFVKVSMDGAPYLRKVDLKMYKSYPELSDALGKMFSSFTIGNCESQGFKDFMNESKLMDLLNSSDCVPTYEDRDGDWMLVGDVPWE 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01538 219 MobiDBLite consensus disorder prediction 51 77 - -
Vimu3g01538 219 Pfam AUX/IAA family 15 219 IPR033389 -
Vimu3g01538 219 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 218 IPR003311 GO:0005634|GO:0006355
Vimu3g01538 219 ProSiteProfiles PB1 domain profile. 133 219 IPR000270 GO:0005515
Vimu3g01538 219 Gene3D - 126 219 - -
Vimu3g01538 219 MobiDBLite consensus disorder prediction 21 102 - -
Vimu3g01538 219 SUPERFAMILY CAD & PB1 domains 127 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01538 Vimu-Chr3 29124264 29125679 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01538 125 218 B3 DNA Binding Superfamily AT3G61830 36.170 2.53e-07 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vimu3g01538 AUX_IAA 8.4e-64 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01538 K14484 - gmx:100780214 343.969