Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01537 ATGGAGAATTCATTGGGAAGCTACGAAAAAGAGCTTAATCTGAAGGCCACTGAGCTGAGATTGGGGTTGCCCGGTAGCGATGAGCCTGAGAAACGTGCTACCGCTAGAAGCAACAAGAGATCTTCGCCGGAAGCAAGTGACGAAGAGAGCATAAGCAATGGTTCTGATGTCACAAAAGAAGACAACGTTGTACCACCTGCAAAGGCACAAGTAGTGGGGTGGCCACCGATTCGATCTTACAGGAAGAATAACGTACAGCAGAAGAAAGAAGAAGAAAGTGAAGGAAATGGGATGTACGTGAAAGTTAGCATGGCAGGTGCACCTTATTTGAGGAAGATAGATCTCAAGGTTTACAAAAGCTACCCTGAACTTCTCAAGGCCTTGGAAAATATGTTCAAGTGCATATTCGGAGAATATTCAGAAAGGGAAGGGTACAATGGATCTGAATATGCTCCAACTTATGAAGACAAAGATGGTGACTGGATGCTGGTTGGAGATGTTCCATGGAAGGATCAGAAGCAAAGGGGTTGGGCTGTTTTTGAGCCGAAAATCAAAGCAGGAGCATGCATATCCATAGCCAAAAACAAAGGGAACTTCTTCTGTTTGGAATAG 612 0.4461 MENSLGSYEKELNLKATELRLGLPGSDEPEKRATARSNKRSSPEASDEESISNGSDVTKEDNVVPPAKAQVVGWPPIRSYRKNNVQQKKEEESEGNGMYVKVSMAGAPYLRKIDLKVYKSYPELLKALENMFKCIFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWKDQKQRGWAVFEPKIKAGACISIAKNKGNFFCLE 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01537 203 SUPERFAMILY CAD & PB1 domains 92 171 - -
Vimu3g01537 203 MobiDBLite consensus disorder prediction 24 46 - -
Vimu3g01537 203 ProSiteProfiles PB1 domain profile. 97 184 IPR000270 GO:0005515
Vimu3g01537 203 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 173 IPR003311 GO:0005634|GO:0006355
Vimu3g01537 203 Pfam AUX/IAA family 34 170 IPR033389 -
Vimu3g01537 203 Gene3D - 91 177 - -
Vimu3g01537 203 MobiDBLite consensus disorder prediction 16 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01537 Vimu-Chr3 29063016 29063937 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01537 88 203 B3 DNA Binding Superfamily AT2G46530 32.773 3.38e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vimu3g01537 AUX_IAA 1.2e-42 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01537 K14484 - gmx:100780752 302.367
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02766 6 24230234 24231197 Vimu3g01537 3 29063016 29063937 PCT