Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01534 ATGGCCAATCACCCTTCCGAACCTCCCACCGATGACTTCCTCGAGCAAATCCTCGGCCTCCCCACCTTCGCCTCCGCCGACCACGCCGACGCTTCTCCGATGATGCTCCAGCTCAACTCCGGGGACGCCGCCTTCCACGCGCCGCCATACCAGCTCGGCCTCAGCTTGGACCAAGGTAAGGGAGGCTTCCTCTCGCCCGAAGATGCTTCTGGAAGCGGCAACCGCTTCCGCGACGACGTCGTTGATACCAGGCCTAAGAACGTTTTTCATGGGCAACCCATGCCAACTACTGTTCCGACTGTCCCACATCCACCAGCAGTGCGACCTAGAGTGCGCGCTAGAAGAGGACAGGCTACAGATCCACACAGTATAGCTGAAAGGTTGCGCAGAGAGAGAATAGCTGAAAGAATCAGGGCTTTGCAAGAACTGGTTCCTAGTGTCAACAAGACAGATAGAGCTGCCATGCTGGACGAAATTGTGGATTATGTCAAGTTCTTAAGGCTTCAAGTAAAGGTTTTGAGCATGAGTAGATTGGGCGGAGCTGGTGCTGTAGCACCACTAGTGACCGATATCCCATTATCATCAGTCGAGGAAGAAGGCAGTGAAGGAAGAAACCAGCCTGCTTGGGAGAAGTGGTCAAATGATGGCACAGAAAGACAGGTAGCTAAGCTTATGGAAGAAAATGTTGGGGCTGCCATGCAGTTTCTTCAATCAAAAGCACTCTGCATCATGCCTATCTCACTGGCATCAGCAATATACCCGTCACAACCATCTGATCCTTCTAGTATAGTTAAACCTGAAACTAATCCTCCTTCTTAG 819 0.5201 MANHPSEPPTDDFLEQILGLPTFASADHADASPMMLQLNSGDAAFHAPPYQLGLSLDQGKGGFLSPEDASGSGNRFRDDVVDTRPKNVFHGQPMPTTVPTVPHPPAVRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSEGRNQPAWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYPSQPSDPSSIVKPETNPPS 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01534 272 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 117 166 IPR011598 GO:0046983
Vimu3g01534 272 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 73 251 - -
Vimu3g01534 272 MobiDBLite consensus disorder prediction 88 121 - -
Vimu3g01534 272 SMART finulus 123 172 IPR011598 GO:0046983
Vimu3g01534 272 FunFam Basic helix-loop-helix transcription factor 112 174 - -
Vimu3g01534 272 Gene3D - 112 174 IPR036638 GO:0046983
Vimu3g01534 272 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 115 176 IPR036638 GO:0046983
Vimu3g01534 272 Pfam Helix-loop-helix DNA-binding domain 122 166 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01534 Vimu-Chr3 29028684 29032733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01534 45 271 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 80.000 2.11e-115 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu3g01534 HLH 9.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01534 - - gmx:100793177 450.669