Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01532 ATGTTGGTGGATGTGTGGGATGTTGCTTTTTTAGTATTCTGGTGTAGTTGGGTTAGTTCTGCCCCTTGTTTGGGGTCTTTAGTTTTTATTTTGCCCCTTTTTGTCTGTTTATTTTTATTTTTTATAGAGGCTAATATGGAAGAGGTTGAGCAAGCTAATAGAGCAGCTGTTGAAAGCTGTCATAAGGTTCTGAGTTTGTTGTCTCAACCAAGGGATCAGGTTCAGCATAGGAATTTAGTGGTGGAAACTGGAGATGCTGTAGTGAAGTTCAAGAAGGTTGTGTCCTTGCTTCAGAGTGGTTTGGGTCATGCAAGAGTGAGGAAGGTTAAAAACCCTCAAGTTCCCTTTACCCATCAAAGTATCTTCTTAGACAACCCAAATTGGAAAACCAACAACCATCACTCAAAAAATCTGCAGCTTTTCCAACCCAGCTTTCCTGACAATTCAATTGTGGAACTGGGTTCAACCATTAAACATTCACTCTCTCTAGGACAGCCCTCTTTGGAATTGAGCTCCAGTGGGAAAAGTGCTCTTCACCTCACTCAGCAGGCTTCATCAACTCACTATCACTTCTTTCAGCAACAGCAACAGCAAAGGGTGTTACTCCAGCAGCAGCAACAACAACAGCAGCAACATTTGAAGCATCAAGCAGAAATGATGTTCCGAAGGAGCAATAGTGGCATAAACCTGAATTTTGACAGCACTAGCTGCACACCAACAATGTCATCTAATAGGTCTTTTATTTCTTCCTTGAGCATAGACGGAAGTGTGGCTAACTTGGATGGAAGTGCCTTCCATTTAATAGGAGCTCCACACTCTTCTGATCAAAATTCGCAACAGCACAAGAGAAAATGTTCTGCAAGAGGCGATGAAGGAAGCTTGAAATGTGGGAGTAGTTCTAGATGTCATTGCTCTAAGAAGAGGAAACATAGAATGAAAAGGTCAATCAAGGTGCCTGCTATCAGCAACAAACTTGCAGATATTCCCCCTGATGATTATTCATGGAGAAAGTATGGCCAAAAGCCCATCAAGGGCTCCCCTCACCCTAGGGGGTACTATAAATGCAGCAGCATGAGAGGGTGTCCTGCTAGAAAGCATGTTGAGAGATGCTTGGAAGAGCCGACCATGCTAATTGTCACCTATGAAGGCGAACATAACCACCCTAAGTTACCAACGCAATCTACAAATGCATGA 1194 0.4296 MLVDVWDVAFLVFWCSWVSSAPCLGSLVFILPLFVCLFLFFIEANMEEVEQANRAAVESCHKVLSLLSQPRDQVQHRNLVVETGDAVVKFKKVVSLLQSGLGHARVRKVKNPQVPFTHQSIFLDNPNWKTNNHHSKNLQLFQPSFPDNSIVELGSTIKHSLSLGQPSLELSSSGKSALHLTQQASSTHYHFFQQQQQQRVLLQQQQQQQQQHLKHQAEMMFRRSNSGINLNFDSTSCTPTMSSNRSFISSLSIDGSVANLDGSAFHLIGAPHSSDQNSQQHKRKCSARGDEGSLKCGSSSRCHCSKKRKHRMKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPKLPTQSTNA 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01532 397 ProSiteProfiles WRKY domain profile. 324 390 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu3g01532 397 Pfam Plant zinc cluster domain 282 327 IPR018872 -
Vimu3g01532 397 FunFam WRKY transcription factor 65 313 390 - -
Vimu3g01532 397 SUPERFAMILY WRKY DNA-binding domain 327 389 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu3g01532 397 Gene3D WRKY domain 311 391 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu3g01532 397 Pfam WRKY DNA -binding domain 331 388 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu3g01532 397 SMART WRKY_cls 329 389 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu3g01532 397 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 47 396 IPR044810 GO:0003700
Vimu3g01532 397 MobiDBLite consensus disorder prediction 270 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01532 Vimu-Chr3 28995668 28997510 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01532 46 394 WRKY Transcription Factor Family AT2G30590 56.919 6.87e-123 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu3g01532 WRKY 5.9e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01532 - - gmx:100170681 595.119