Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01530 ATGGTGAATTCCGATATCCTCTCTGTCAAGAAGTTCAGTTTTCGAGGCGTCGATCTCGATGCTCTGTTGGACATGTCCACCGATGAACTCGTCAAGCTCTTCAGTGCACGCGCCCGTAGAAGATTTCAACGCGGTTTGACCCGCAAACCTATGGCACTAATCAAGAAGGTCCGTAAGGCGAAACGGGAGGCTCCAGCTGGTGAGAAGCCAGAGCCGGTGAGAACCCACCTCCGCAACATGATCATCGTGCCCGAGATGATAGGGAGCATCATTGGTGTTTACAATGGGAAAACCTTCAATCAAGTTGAAATTAAGCCGGAAATGATTGGGCATTATCTTGCCGAGTTTTCAATCTCTTACAAGCCTGTTAAGCATGGAAGGCCTGGTATAGGTGCCACCCACTCCTCTAGGTTTATTCCTCTGAAATGA 429 0.4895 MVNSDILSVKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTRKPMALIKKVRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01530 142 Hamap 30S ribosomal protein S19 [rpsS]. 38 131 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vimu3g01530 142 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 9 142 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vimu3g01530 142 Gene3D 30s Ribosomal Protein S19; Chain A 5 142 IPR023575 GO:0003735|GO:0005840|GO:0006412
Vimu3g01530 142 Pfam Ribosomal protein S19 40 125 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vimu3g01530 142 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 2 142 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vimu3g01530 142 SUPERFAMILY Ribosomal protein S19 45 126 IPR023575 GO:0003735|GO:0005840|GO:0006412
Vimu3g01530 142 NCBIfam 30S ribosomal protein S19 9 142 IPR005713 GO:0003735|GO:0006412|GO:0015935
Vimu3g01530 142 ProSitePatterns Ribosomal protein S19 signature. 95 119 IPR020934 GO:0003723
Vimu3g01530 142 FunFam 40S ribosomal protein S15 3 142 - -
Vimu3g01530 142 PRINTS Ribosomal protein S19 family signature 95 107 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vimu3g01530 142 PRINTS Ribosomal protein S19 family signature 75 94 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vimu3g01530 142 PRINTS Ribosomal protein S19 family signature 107 122 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01530 Vimu-Chr3 28982497 28983333 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01530 8 142 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 89.630 2.42e-87 249
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01530 3 28982497 28983333 Vimu3g01530 3 28982497 28983333 ECH