Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu3g01529 | ATGGCAACGGAAGAACCCACTGTCGTTATGGAACCCGCACCCGAGCCTGCTGCCACTGAGTCTCCGCCGGAGGAGAAGGAGGAGCCTAAATCTGAAGCCAAGGCTAAGAAGACCAAGGAACCCAAACCTAAGAAGGTTTCTAGGCCTCGTAATCCTCCAACTCATCCTTCATACGAAGAGATGATCAAAGATGCAATTACCTCCTTGAAGGAGAAAACTGGTTCCAGCCAATATGCCATTGCGAGGTTCGTTGAGGAGAAGCACAAACAGCTTCCCTCAAACTTCAGGAAGCTTCTTCTATACCACTTGAAGAAGCTTGTTGCTGCTGGAAAGCTGGTCAAAGTCAAAGGCTCCTTCAAGCTTCCGCCTACCAGGCCTGCCCCTTCTTCCCCTGCCAAGAAGAAGCCAGCAGCTGCTAAGCCCAAGCCTAAGCCCAAGCCCAAGCCTGCTGCCAAGGCCAAAGATGCCAAGACTGCTAAGTCAAAGGCACCTGCTAAGGCAAAACCTGCTGCTAAGCCTAAGGCCAAGGCTCCAGTCAAGTCCAAACCTGCCGCAAAGCCCAAGGCTGCTCCCAAGCCTAAGGCTGCCGCTGCCAAGACGAAGGCCGCTAAGCCAGCCGCTAAGCCCAAGCCAGCTGCAGCCAAGCCCAAAGCTGCTAAGCCTGTTGCGAAGCCCAAGGCTAAGCCTGTGAAGGCTGCCAGGACTTCTACTAGGACTTCACCAGGGAAGAAAGCCCCTGCAGCTAAGCCCGCGCCGAAGAAAGTGGCGGCAGCTGCGAAGAAAACTCCAGTGAAGAGTGTGAAGCCCAAGAGTGTAAAGTCCCCGGCGAAAAAGACTGCTACCAAAAGAGGGGGAAGGAAGTGA | 864 | 0.5428 | MATEEPTVVMEPAPEPAATESPPEEKEEPKSEAKAKKTKEPKPKKVSRPRNPPTHPSYEEMIKDAITSLKEKTGSSQYAIARFVEEKHKQLPSNFRKLLLYHLKKLVAAGKLVKVKGSFKLPPTRPAPSSPAKKKPAAAKPKPKPKPKPAAKAKDAKTAKSKAPAKAKPAAKPKAKAPVKSKPAAKPKAAPKPKAAAAKTKAAKPAAKPKPAAAKPKAAKPVAKPKAKPVKAARTSTRTSPGKKAPAAKPAPKKVAAAAKKTPVKSVKPKSVKSPAKKTATKRGGRK | 287 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu3g01529 | 287 | MobiDBLite | consensus disorder prediction | 112 | 287 | - | - | |
| Vimu3g01529 | 287 | MobiDBLite | consensus disorder prediction | 1 | 61 | - | - | |
| Vimu3g01529 | 287 | PANTHER | HISTONE H1 | 21 | 254 | - | - | |
| Vimu3g01529 | 287 | SMART | h15plus2 | 52 | 118 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Vimu3g01529 | 287 | PRINTS | Histone H5 signature | 41 | 62 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Vimu3g01529 | 287 | PRINTS | Histone H5 signature | 68 | 85 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Vimu3g01529 | 287 | PRINTS | Histone H5 signature | 110 | 134 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Vimu3g01529 | 287 | PRINTS | Histone H5 signature | 182 | 199 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Vimu3g01529 | 287 | PRINTS | Histone H5 signature | 147 | 161 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Vimu3g01529 | 287 | PRINTS | Histone H5 signature | 204 | 223 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Vimu3g01529 | 287 | MobiDBLite | consensus disorder prediction | 148 | 162 | - | - | |
| Vimu3g01529 | 287 | CDD | H15 | 52 | 124 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Vimu3g01529 | 287 | Pfam | linker histone H1 and H5 family | 55 | 121 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Vimu3g01529 | 287 | FunFam | Histone H1 | 49 | 134 | - | - | |
| Vimu3g01529 | 287 | MobiDBLite | consensus disorder prediction | 271 | 287 | - | - | |
| Vimu3g01529 | 287 | SUPERFAMILY | "Winged helix" DNA-binding domain | 51 | 135 | IPR036390 | - | |
| Vimu3g01529 | 287 | ProSiteProfiles | Linker histone H1/H5 globular (H15) domain profile. | 54 | 123 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Vimu3g01529 | 287 | MobiDBLite | consensus disorder prediction | 20 | 39 | - | - | |
| Vimu3g01529 | 287 | MobiDBLite | consensus disorder prediction | 167 | 181 | - | - | |
| Vimu3g01529 | 287 | Gene3D | - | 50 | 127 | IPR036388 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu3g01529 | Vimu-Chr3 | 28873584 | 28874538 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vimu3g01529 | 56 | 123 | Single Myb Histone (SMH) Gene Family | AT1G72740 | 35.294 | 3.05e-08 | 52.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu3g01529 | K11275 | - | gmx:100795994 | 165.622 |