Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01527 ATGACAGACATATTTGAAAACCAACCATCACCTGATTCTTCAAATTATGCATCAAGCAGTGGCTTCTCTGTGGACGACAAGGAGATTGGATATGGAGCTGCAACATCAAAACATATATATCTTTTGGCCAACAAATCTGCTATCCACTTCTTTTCCATCAAAATTGACCTGAATTATGCTCGCATGGTAATGGCAGAATTGGTGGGTACTTTTATTTTGATGTTCTGTATATGTGGAATCAGTGGAAGCACAGAATTCCAAAAGGGTGCAGTGGGCCTTGCGGTGTATGCAGCTACAGCAGGGTTAACAGTGGTGGTGATAATTTTCTCTATAGGGCCAATATCTTGTGCGCACGTTAACCCAGCTGTCACAATAGCTTTTGCTACAATGGGTCAATTTCCATGGTTGAAGGTTCCAGTTTACATAATAGCACAGACAGTAGGTTCTATGTCGGCAACATACATAGGTAGCCTTGTATACGGCACAAAATCAGATGCTATCATGACCATGCCACTCCAAGGGTGCATCTCTGCCTTCTGGGTGGAGCTTATTGCAACTTTCATCATCATGTTCCTCGTTGCAGCTTTGACATCTGAATCTCAATCAGTGGGCCATTTATCTGGCTTTGTTGCTGGTGTAGGAATTGGGCTTGGTGTGCTAATCACAGGACCAGTCTCAGGTGGATCAATGAATCCTGCAAGATCGTTAGGTCCGGCAATTCTCTCATGGAAATTTAAGAACATATGGATATACATGGTAGCCCCGAGTGGTGGAGCTGTGGCAGGAGCTGCAATGTTTCGTTTCCTACGCATTAGAGAACAACATTCTACAACTTTGTTCTCCCCAAACATCAGTGACGCTGGTCGTCCCATACCCTTTTGCTCAAGAAATCAAAACAGCAGCGATCCAGACACAGCAATTCACAATCTCTTACAGCTACGGTGGTGCATGTATGGTCTGTGTTTTGCACTTCTCACCAACATGCACAGAGAGTATAATGGAAAGCCAACCTTCACACAGATCGTGGTGGCTTCCTCCATTGGGTTGATATTTGCTGCAGCAATGCATTATCGACTTAAGAAAATGAGAGATCGAAAGACCATTCCACGTCTCAGAATATCAAAGGCAAAACGTACCCCAAAGCTTGAAAAGTTTCCTCATTACGTAGCTAGGCAAATGGGGTTCAAAGATAGAAGATGTTGTCCTCATCTTTGTAAATTGGCTTCTGAATACATAAGGAAATCCGAGGGATGTGAAAATGATCTCTATACCTTCTTTGAGAATGAACCAGATGCCGATTCGCTTTTTGTGAAGCTTGTGGAAGAGTTTGAGAGATGCATTCTCAGTTACTTTGCATTCCATTGGAGACATGGTGATATTTTGATAAGTCAGGTGTTTAGCTCTGAAATTGAACCAAGGGCAAAGCTCAGGCACATAGTTATGGCAGCAACTAGGGAACAAAGGATCGACAGAGTGACCAAGAATCTAAAGGTGGCTAGAGTTTTCAACACATTAGTGGAAGAAATGAAAGCAATGGGGCTGACAAATGATGACTCCCAATGCACAGAGGTGATGGCTCCAGTGGCTCACAGTGATAGGAGCCCAGTGCTTCTTTTCATGGGTGGTGGCATGGGAGCTGGCAAAAGCACTGTACTCAAGGACATTCTTAAAGAACCTTTCTGGGCAGGAGCAGCAGGCAATGCTGTCATCATTGAGGCAGATGCCTTCAAAGAATCAGATGTCATCTATAGGGCCCTCAGTGCAAGAGGGCATCAGGACATGATTAGAACAGCTGAACTGGTACACCAATCATCAACTGACGCAGCCTCATCCCTCCTAGTGACAGCACTAAATGAGGGGCGTGATGTAATAATGGACGGTACACTCTCCTGGTTACCATTTGTTGTGCAAACAATAACAATGGCTAGAAATGTCCACCGCCGCCGCTACCGCATGGGACCTGGCTACAAGATGAATGGCGATGGAACTGTCACTGAAAACTATTGGCAGCGAATTGAGGAAGAGCAAGACCGGGTTGAAGGAAAAAGGAGAAAACCATACAGAATAGAGCTTGTTGGAGTAGTATGTGATGCTTACCTTGCTGTCATTAGAGGCATAAGGAGAGCTATCATGTGTAGAAGAGCAGTAAGAGTGAAGTCACAACTGACATCGCACAAGAGATTTGCTGATGCATTTCTGACTTATTGTCAGCTAGTTGACAATGCTAGGCTATACAGTACAAATTCTTTGGAAGCTCCACCTAAGATAAATGTTGTAAAGTTGATAGGATGGAAAGATAGAGACAAGACATTGCTCGTTGATCCAGATGAAATAGACTGTTTGAAGAGGGTGGCAACGTTGAACGAAAGTGCCAACAACATATATGAACTTTACAAGCACCCCAACCCAGCTTGTGAAGTTGGATCCATATGGAAAGACATTGTGCTATCTCCTTCAAGGTTGAACGTCCAAAAAGAGCTGAAAGAAGACAAAACTCCAGTTGAGGAGCAGCAAACTTCTCATCCAAATCTCAGTTCTAGCTCATCAGCCTCTCCTATAACAGGTTCACTAGAAGAATACCAGACTCCATGGAAACGTAGAATATGCAATATCATTGATTGGACTTCAATTGCATTCATGGATCCTAAGAGTTCCTACAGGGCATATCCCACGTCGAGTGACGATATCTGCAAGTACCTTGGGCACCATGACAGATCCACCATGCGCCACCACTTACTCCTAGAGGGGGTAGGTTGTGAAGGGTGTAATCAAGACTGGTTCACTTTGTGTCCAAGGAGGAGACCCAGCTGGGTCAGATTCACTTCATCCCAACAGACGACCAAAATTGAGGGGAAAGATGGAGAGGAGAGGGGTCGCCAAAAATGA 2886 0.4432 MTDIFENQPSPDSSNYASSSGFSVDDKEIGYGAATSKHIYLLANKSAIHFFSIKIDLNYARMVMAELVGTFILMFCICGISGSTEFQKGAVGLAVYAATAGLTVVVIIFSIGPISCAHVNPAVTIAFATMGQFPWLKVPVYIIAQTVGSMSATYIGSLVYGTKSDAIMTMPLQGCISAFWVELIATFIIMFLVAALTSESQSVGHLSGFVAGVGIGLGVLITGPVSGGSMNPARSLGPAILSWKFKNIWIYMVAPSGGAVAGAAMFRFLRIREQHSTTLFSPNISDAGRPIPFCSRNQNSSDPDTAIHNLLQLRWCMYGLCFALLTNMHREYNGKPTFTQIVVASSIGLIFAAAMHYRLKKMRDRKTIPRLRISKAKRTPKLEKFPHYVARQMGFKDRRCCPHLCKLASEYIRKSEGCENDLYTFFENEPDADSLFVKLVEEFERCILSYFAFHWRHGDILISQVFSSEIEPRAKLRHIVMAATREQRIDRVTKNLKVARVFNTLVEEMKAMGLTNDDSQCTEVMAPVAHSDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVIIEADAFKESDVIYRALSARGHQDMIRTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWLPFVVQTITMARNVHRRRYRMGPGYKMNGDGTVTENYWQRIEEEQDRVEGKRRKPYRIELVGVVCDAYLAVIRGIRRAIMCRRAVRVKSQLTSHKRFADAFLTYCQLVDNARLYSTNSLEAPPKINVVKLIGWKDRDKTLLVDPDEIDCLKRVATLNESANNIYELYKHPNPACEVGSIWKDIVLSPSRLNVQKELKEDKTPVEEQQTSHPNLSSSSSASPITGSLEEYQTPWKRRICNIIDWTSIAFMDPKSSYRAYPTSSDDICKYLGHHDRSTMRHHLLLEGVGCEGCNQDWFTLCPRRRPSWVRFTSSQQTTKIEGKDGEERGRQK 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01527 961 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 530 670 IPR027417 -
Vimu3g01527 961 CDD MIP 61 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu3g01527 961 MobiDBLite consensus disorder prediction 1 20 - -
Vimu3g01527 961 PRINTS Major intrinsic protein family signature 61 80 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu3g01527 961 PRINTS Major intrinsic protein family signature 137 156 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu3g01527 961 PRINTS Major intrinsic protein family signature 181 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu3g01527 961 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu3g01527 961 PRINTS Major intrinsic protein family signature 100 124 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu3g01527 961 PRINTS Major intrinsic protein family signature 212 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu3g01527 961 PANTHER UNCHARACTERIZED 330 839 IPR044802 -
Vimu3g01527 961 SUPERFAMILY Aquaporin-like 57 276 IPR023271 -
Vimu3g01527 961 Gene3D - 518 755 IPR027417 -
Vimu3g01527 961 Pfam Major intrinsic protein 59 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu3g01527 961 Gene3D Glycerol uptake facilitator protein. 41 279 IPR023271 -
Vimu3g01527 961 MobiDBLite consensus disorder prediction 827 854 - -
Vimu3g01527 961 Pfam Zeta toxin 529 640 IPR010488 GO:0005524|GO:0016301
Vimu3g01527 961 ProSitePatterns MIP family signature. 118 126 IPR022357 -
Vimu3g01527 961 MobiDBLite consensus disorder prediction 837 854 - -
Vimu3g01527 961 MobiDBLite consensus disorder prediction 941 961 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01527 Vimu-Chr3 28832831 28850330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01527 56 291 Major Intrinsic Protein MIP AT4G10380 40.336 2.86e-48 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01527 - - pvu:PHAVU_007G178200g 962.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01527 3 28832831 28850330 Vimu3g01527 3 28832831 28850330 ECH
Vimu6g02754 6 24101314 24104802 Vimu3g01527 3 28832831 28850330 PCT