Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01518 ATGATGGGGGAGAAGTTTTGTGTGAACGAAGAAGACAAGGGTGTGTTGGAGTCTGTGTTAGGTGCAGAGGCTGTTGCGTTTTTCATTTCAGCACTTTCCAATAATGTTTTTTCCAGCGTTGTTGCTCCTTCTGTCGGTGCTGACTCGACCCTCCGTCAGAGGTTGTGCCAGCTTGTTGAGGGTTCCAAATGGAACTATGCAGTGTTCTGGCAAGTTGCTGGCTTGAAATCTGGTGGTTCTGCCTTGATTTGGGGTGACGGGCATTGCAGTGATCCCAAAGGGAAGAGGAGTTCAATGGGGAAAGACGATGAGCAGGAGGTGAGAAAGATGGTGCTGCAGAAGCTTGATGCTTGTTTTGGTGGGTCTGTGTCGAAAGAGGCTAATTATGCAAGACTGGATAGGTTGTCTGATTTGCTCATGTTTTACTTATCTTCAATGTGTTACATATTCGGTTTTGATTCGCCATGTGGTCCTGGGAGTTCATTCAAATCTGGTAAATTGATTTGGACATCTGATGTTGCCGGTTGTTTGAATCAATTAGAATCTAGATCATTTCTAGGGAAAGTGGCTGGTCTTCAAACTGTTGTTTTTGTTCCTCTGAAATCTGGGGTGGTGGAGCTTGGTTCGAATGAAGTGGTGTCTGAAGAACAGGGTTTTGTGGAGATGGTGAAGACAGCAATTGGGGAATCCAGTCCCGGGCAGACTAAGGTGTTTCCGAAGATTTTTGGGCACGAATTAAGCCTGGGGGATACAAAATCTCAGTCTATAACCATTAGTTTCTCCCCAAAGGTGGAAGATGATCCTGGTTTTACTTCAGACTCTTTTGAAGTTCAAGCACTGGGGTTGAACCATGCGTATGGAAATTCATCCAATGGAACTTTGGGGGACAGTAGTGAAGGGAAGATGTTCCCTCAATTGAATCAAATGATGGGTGGAAATTTTAATGCCCAAGCAAGGGTTCCTTGTCTAGATCTCGGTAATGAAGACACGTCCTCAATTCATGCAGATGAGAGGAAGCCCAGAAAAAGAGGTAGAAAACCTGCTAATGGGAGAGAGGAACCACTGAATCATGTTGAAGCAGAGAGACAGAGACGTGAGAAGCTTAACCAGAGGTTTTATGCCTTAAGAGCTGTTGTCCCCAATATATCTAAAATGGACAAGGCATCTTTGCTTGGTGATGCCATTACCTTCATCACTGATCTCCAGATGAAGATCAAAGTGTTGGAAGCTGAGAAGAACATGATTAACAACAAGGACCAGAGGTTATCCTTGCCAGATATGGATTTTCAGGAAAGAGAGGATGACACAGTTGTGACAGTGAGATGCCCTTTAGATACTCACCCTGTTTCTGATGTAGTTAAAACTTTCAGGGAGCATCAAATTGTGGCTCAAGACTCCAATGTTTCTACTACAGATGATAAAATCATTCATACATTCTCCATAAGAACTGAGGGAGGGGAGGCTGCTGCCATACAGTTGAAAGAAAAGCTTGAAGCGGCCCTATCCAAAAATTGA 1515 0.4409 MMGEKFCVNEEDKGVLESVLGAEAVAFFISALSNNVFSSVVAPSVGADSTLRQRLCQLVEGSKWNYAVFWQVAGLKSGGSALIWGDGHCSDPKGKRSSMGKDDEQEVRKMVLQKLDACFGGSVSKEANYARLDRLSDLLMFYLSSMCYIFGFDSPCGPGSSFKSGKLIWTSDVAGCLNQLESRSFLGKVAGLQTVVFVPLKSGVVELGSNEVVSEEQGFVEMVKTAIGESSPGQTKVFPKIFGHELSLGDTKSQSITISFSPKVEDDPGFTSDSFEVQALGLNHAYGNSSNGTLGDSSEGKMFPQLNQMMGGNFNAQARVPCLDLGNEDTSSIHADERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITFITDLQMKIKVLEAEKNMINNKDQRLSLPDMDFQEREDDTVVTVRCPLDTHPVSDVVKTFREHQIVAQDSNVSTTDDKIIHTFSIRTEGGEAAAIQLKEKLEAALSKN 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01518 504 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 355 421 IPR036638 GO:0046983
Vimu3g01518 504 Gene3D - 345 418 IPR036638 GO:0046983
Vimu3g01518 504 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 352 401 IPR011598 GO:0046983
Vimu3g01518 504 MobiDBLite consensus disorder prediction 326 359 - -
Vimu3g01518 504 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 225 IPR025610 -
Vimu3g01518 504 PANTHER MYC 41 500 IPR045084 GO:0003700|GO:0006355
Vimu3g01518 504 CDD ACT_UUR-ACR-like 436 503 - -
Vimu3g01518 504 Coils Coil 398 418 - -
Vimu3g01518 504 CDD bHLH_AtAIB_like 349 426 - -
Vimu3g01518 504 MobiDBLite consensus disorder prediction 330 359 - -
Vimu3g01518 504 Pfam Helix-loop-helix DNA-binding domain 356 402 IPR011598 GO:0046983
Vimu3g01518 504 FunFam Transcription factor bHLH13 345 419 - -
Vimu3g01518 504 SMART finulus 358 407 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01518 Vimu-Chr3 28688074 28690862 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01518 2 503 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 48.039 1.02e-155 450
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu3g01518 bHLH-MYC_N 1.8e-41 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01518 - - gmx:100782107 917.916