Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01516 ATGTCCACAAGCATGGCGATTTTGCAGGGCCTTCAGCCATTTCTGCTCTCACAAACCTTCATCACTATCACTTCTCCATTCGCGCTAAGCAAACTCCAAAACAATTATTCTGTTCGCTTCTATTCTCATTCCGATCTCTCTTGCACGTTCAAAACCACCGCTCCCTCGCGTTCAACTTCTATCCATGATTTCTCTTCCACGCCGTTGGAAAATGTCCGCACGTGTTTTTCTTGGCCGGTGACACCTATTTGGCTGAGGTTCATATTCTCCGGAAATGGTACGGTTGTTGCTGATTTCGATTTGAGCTATCGAGATTTTACAATTCGTAAAACGTTGATAGGCATACTAAAGGAAGTTGCTGAAAACCTGGAAGATGAGAAGGGGGTTCCGGAAAATATTGTTGTTGGTTCTCATGTTTGGGTTGGAGATCCAGAAGTAATTTGGATTGGTGGCCAGGTACTGAGTATCAACGGAGAAGATGCTGAAATTCAGATTAGTGATGAGAGGAAGGTTGTTTCCCATTTGTCAAAATTATATCCAAAGGATATCGATGCACCTGCTGATGGAGTTGATGACATGACCAAGCTTGCTTATTTGCATGAGCCAGCAGTGCTGCATAATTTGGAAACTAGATATGCGATTAATGAAATATATACTTATACTGGAAATATTCTCATTGCAATCAATCCCTTCCAAAGTCTTTCACATCTCTATGATACTAATGTGATGCAAAGATACAAGGGATCAATGATTGGAGACTTGAGCCCACATGTTTTTGCTATTGCCGAAGGAGCTTATAGGGAAATGATGAATGAGGTGAAAAGCAATTCTATTCTTGTTAGTGGTGAGAGTGGTGCTGGTAAGACAGAAACCACCAAAATGCTTATGCAGTACCTGGCATATTTAGGTGGTCACACTGCATCAGAAGGCCGAACAGTTGAAAAACAAGTTCTAGAGTCAAATCCAGTTCTTGAAGCATTTGGTAATGCAAAAACTGTTAGAAATGACAATTCCAGCCGTTTTGGAAAATTTGTTGAGATCCAATTTGATAAGTTTGGACGAATATCTGGTGCAGCCATTAGAACTTATCTGCTTGAGAAATCTCGTGTTTGCCAAATCTCAGATCCTGAGCGTAACTATCACTGTTTTTACCTTCTCTGCGCTTCTCCTCCGGAGGAAAAGGAGAAATATAAGTTGGGAGATCCTAAATCATTTCACTACCTTAACCAATCCAATTGCTACGAATTAGTTGGTGTTAATGCTGCTCAAGACTATCTTAGCACCAAGAGAGCCATGGATATTGTGGGAATCAGTCAGGACGAGCAGGATGCTATTTTCAGAGTTGTAGCTGCTATTCTTCATCTTGGAAATATTAACTTTTCAAAATCAGAAGAAACTGATTTCGCAGTTCTAGAAGAAGAAGAATCCAAGTTTCATCTACAAACAACAGCAGAACTTCTTATGTGTGATGCGCATGCTTTGGAAGATGCACTGTGTAAGCATGATGACACTTACAGGGCTGTTATCAAATTACTTGGTAGTTTTAGGCTATTTAAGTTTTGTATAAATTTCACAAATGAAAAGCTGCAGCAACACTTCAACCAGCATGTGTTTAAGATGGAGCAGGAGGAATATACAAAAGAAGGGATTGACTGGAGCTACTTAGAATTTGTAGATAATCAAGATGTACTGGATCTCATTGAAAAGGATGCACAGGCACACCAAGGATTGAACTCTTTACCACTTGGTCACAAACTTTTGAGAAGTTTAAGAATAAAATATCCTACAAACTTTGTTTTCACAGGCTCAACAATTGTTTCTATAACTCTGACAAAAGCATCTCAACAGTCAATGTTTAGAGAAATTGAGGGGAATTTCTGGACGTTGTGTTTTTGCTCAGATGCCTGGCAGTTGGCTGGGCTTACAATTGGTGGTGTGTATTTGTTGTCTTGTGTTAGACCTAATTGCATCATTGATATCTATAATTCTCTTTTTCAGAAACCTGGTGGAATTATTGCTCTGCTTGATGAAGCTTGTATGTTTCCTAAGTCAACTCATGAAACATTTTCACAGAAGCTTTATCAGACATTCAAAGATCACAAACGCTTCATTAAGCCAAAATTGACACGTTCAGACTTCACTGTTAGTCATTATGCAGGAGATGTTCAGTATCAATCTGAGCACTTTTTAGACAAAAACAAAGACTATGTTGTTCCTGAACATCAAGAGATGCTAAGTTCTTCCAAATGTTCATTTGTATCAGGTCTTTTCCCTCCACTTTCTGAGGAGTCAGCCAAATCTTCTAAGTTTTCTTCCATTGGTTCTCGTTTCAAGGTTTATAAAATATGGTTCTTTATATTGTCAGTATCTGATAGGCCTTACCTCAATCCAAAGGGTGTTCTTGAAGCAGTAAGAATTAAATGTGCTGGATTTCCCACTCACTGGACCTTTCATGACTTTATAACTCGATTATGGATTCTTGCTCCGGAGATTCTTCGAGGGAACTTTGATGAAAAAGATTCGTGTAAAAAGATTTTGGAGAAGATTGGGCTGACAGGTTATCAGATAGGGGAAACAAAAATATTCTTAAGAGCTGGTCAGATGTCTGAATTGGATGCTCGAAGGTCGTTGCTGCTTAGTAGTTCAGCTATTGTTATTCAAAAGAATGCTAAAACTCGCTGTAGTCGGAAAACATATATTGATTTGCGAAAGTGCTCTGTTTTCCTTCAATCCATTTGCAGAGTTCTCATTGATTATTCTGTAGTCTTGAAGCCTAATCGCAAAGGTTTCAAAGGGACTCTGAAGCTTAGGCAAGTTGCTGCAGTCAGAATTCAAAAGCAGATGCGAAGAACACTAGCTAGGAAGCAGTATGTTGAAATAAAGTTCTGTGCAAATGTGTTGCAGACAGGTTTTCGAGCAATGGCTGCTTGTAATCAATTTAGATATAAAAAGCAAACATATAGAAAGCAGACTAGTGCATCAACAACTATTCAGGTTTCAGAGACTCCTCTGCAAAATGAAAGTCCTTCTATGGAAGAATCTTCATATCCTGTGCATGAAGAATCCTCAAATCCTGTGCAAGAAGACGAAAGTATTGAAGCTATCAGGGATTCTTCCAGTCCTCTCAAAGACACTGACAAGATTGAGGTTCTTGCTGTAGAAATAAAAAACTTAAAGGTCAAGTTGCATGCAGAAAAACAAAGAGGTGATGAATATGAAAGGAAATATGCAGAAGCTCAAGGATCCAATGAAGAGTTACGCAAAATATTAGCAGAAACTGAAAAAAGAGTACATCAGATTCAGGACACTTGGAACAGGATGATGTCTTCCATGTCAAATCAAGTTGCCGCCGACCTGAAGACGATCTTGAGTACTTCATCAAGATTGAGTTCAAATTTTCGACCTATAGCTAGAGTCGACGTTGCTTCTAGTAACTCTGATACTTCGTCTACAGACTCTGATTTCACATTTCCAGCTACTGCACCAAATCCAGAACCTCAGGAGTCAAATTCTTTGCCGCTAGTAGTTCAGGATGTCACTGCAGGGGATGGATCGGGATCTGAAAGTGGAAAGGAGGGTTCATTTGATGATTTCTTCTAG 3600 0.3933 MSTSMAILQGLQPFLLSQTFITITSPFALSKLQNNYSVRFYSHSDLSCTFKTTAPSRSTSIHDFSSTPLENVRTCFSWPVTPIWLRFIFSGNGTVVADFDLSYRDFTIRKTLIGILKEVAENLEDEKGVPENIVVGSHVWVGDPEVIWIGGQVLSINGEDAEIQISDERKVVSHLSKLYPKDIDAPADGVDDMTKLAYLHEPAVLHNLETRYAINEIYTYTGNILIAINPFQSLSHLYDTNVMQRYKGSMIGDLSPHVFAIAEGAYREMMNEVKSNSILVSGESGAGKTETTKMLMQYLAYLGGHTASEGRTVEKQVLESNPVLEAFGNAKTVRNDNSSRFGKFVEIQFDKFGRISGAAIRTYLLEKSRVCQISDPERNYHCFYLLCASPPEEKEKYKLGDPKSFHYLNQSNCYELVGVNAAQDYLSTKRAMDIVGISQDEQDAIFRVVAAILHLGNINFSKSEETDFAVLEEEESKFHLQTTAELLMCDAHALEDALCKHDDTYRAVIKLLGSFRLFKFCINFTNEKLQQHFNQHVFKMEQEEYTKEGIDWSYLEFVDNQDVLDLIEKDAQAHQGLNSLPLGHKLLRSLRIKYPTNFVFTGSTIVSITLTKASQQSMFREIEGNFWTLCFCSDAWQLAGLTIGGVYLLSCVRPNCIIDIYNSLFQKPGGIIALLDEACMFPKSTHETFSQKLYQTFKDHKRFIKPKLTRSDFTVSHYAGDVQYQSEHFLDKNKDYVVPEHQEMLSSSKCSFVSGLFPPLSEESAKSSKFSSIGSRFKVYKIWFFILSVSDRPYLNPKGVLEAVRIKCAGFPTHWTFHDFITRLWILAPEILRGNFDEKDSCKKILEKIGLTGYQIGETKIFLRAGQMSELDARRSLLLSSSAIVIQKNAKTRCSRKTYIDLRKCSVFLQSICRVLIDYSVVLKPNRKGFKGTLKLRQVAAVRIQKQMRRTLARKQYVEIKFCANVLQTGFRAMAACNQFRYKKQTYRKQTSASTTIQVSETPLQNESPSMEESSYPVHEESSNPVQEDESIEAIRDSSSPLKDTDKIEVLAVEIKNLKVKLHAEKQRGDEYERKYAEAQGSNEELRKILAETEKRVHQIQDTWNRMMSSMSNQVAADLKTILSTSSRLSSNFRPIARVDVASSNSDTSSTDSDFTFPATAPNPEPQESNSLPLVVQDVTAGDGSGSESGKEGSFDDFF 1199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01516 1199 Gene3D - 937 989 - -
Vimu3g01516 1199 Pfam Myosin head (motor domain) 796 864 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu3g01516 1199 Pfam Myosin head (motor domain) 519 570 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu3g01516 1199 Pfam Myosin head (motor domain) 190 501 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu3g01516 1199 Pfam Myosin head (motor domain) 659 768 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu3g01516 1199 Gene3D Myosin VI head, motor domain, U50 subdomain 438 502 - -
Vimu3g01516 1199 MobiDBLite consensus disorder prediction 991 1040 - -
Vimu3g01516 1199 MobiDBLite consensus disorder prediction 1023 1040 - -
Vimu3g01516 1199 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 905 IPR027417 -
Vimu3g01516 1199 FunFam Myosin heavy chain 378 433 - -
Vimu3g01516 1199 ProSiteProfiles Myosin motor domain profile. 799 876 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu3g01516 1199 SMART MYSc_2a 182 877 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu3g01516 1199 Coils Coil 1048 1103 - -
Vimu3g01516 1199 ProSiteProfiles IQ motif profile. 937 961 IPR000048 GO:0005515
Vimu3g01516 1199 MobiDBLite consensus disorder prediction 1142 1199 - -
Vimu3g01516 1199 Gene3D - 516 582 - -
Vimu3g01516 1199 Gene3D Kinesin motor domain 191 377 IPR036961 -
Vimu3g01516 1199 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 134 183 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vimu3g01516 1199 Gene3D - 653 780 - -
Vimu3g01516 1199 Gene3D - 810 919 - -
Vimu3g01516 1199 MobiDBLite consensus disorder prediction 1142 1176 - -
Vimu3g01516 1199 Gene3D - 378 436 - -
Vimu3g01516 1199 SMART iq_5 878 900 IPR000048 GO:0005515
Vimu3g01516 1199 SMART iq_5 936 958 IPR000048 GO:0005515
Vimu3g01516 1199 PANTHER MYOSIN 182 502 - -
Vimu3g01516 1199 PRINTS Myosin heavy chain signature 218 237 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu3g01516 1199 PRINTS Myosin heavy chain signature 322 349 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu3g01516 1199 PRINTS Myosin heavy chain signature 275 300 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu3g01516 1199 MobiDBLite consensus disorder prediction 991 1022 - -
Vimu3g01516 1199 ProSiteProfiles Myosin motor domain profile. 188 778 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01516 Vimu-Chr3 28598742 28620307 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01516 659 999 Myosins gene family AT1G08730 54.098 8.07e-111 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01516 K10357 - gmx:100819436 741.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01516 3 28598742 28620307 Vimu3g01516 3 28598742 28620307 ECH