Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01513 TTGATAAATGATCATGTTCATAAGCACAAAGCTGAAGAGATAATAGAGCCAGAAATAATTCGAATTAAAAAGTCCAAGATGACTGGTTCAGGATCTCCTTGTGGAGCCTGCAAATTCTTGAGAAGAAAATGCGTCAGAGGTTGTGTTTTTGCACCTTACTTTTGCCATGAACAAGGTGCTACTCATTTTGCAGCCATTCATAAGGTCTTTGGTGCAAGCAATGTCTCAAAGCTCCTTGCTCACCTCCCTGTCACTGATCGTTGTGAAGCTGCTGTCACAATCTCATATGAAGCTCAAGCCAGACTTCAGGATCCTATTTATGGCTGTGTCTCCCATATTTTTGCACTCCAACAACAGGTGGTCAATTTACAAGCACAGCTGGCTTATCTCAAGGAACAAGCTGCCCAGTGTTGTCTCAACGCCTCTGTCACTGAAAACCCTAGTGAAAAATTATTTGAAAAATCTTCAGCTGCTATACCCCAAGATCTTCAAAGTTGGTTTCAGGTGGAAAATTCCAACCTGGGGCCAGAGTTTCTTCCTAACATGTGTAGTACTAATTTTTCAACACAAAAACATTATGGGAATAATGCTCTCATTGAAGATCTAAACCCTACCGGGATCAATTATGAAAATTCAGGTGCCATGGAAGAAAACAGCTCCTTTTCTAGCTTTGACGAGAGTTCTAATAGCTATTCCATGTCCTATGACATGCACACAAACAGGAGGACGTGGGGTTTTCATGAAGTTGAGGACCTACATTCAGTGGCTTTTGGGTACAGTACTCGAACACATTCATGA 798 0.4148 MINDHVHKHKAEEIIEPEIIRIKKSKMTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVTDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLAYLKEQAAQCCLNASVTENPSEKLFEKSSAAIPQDLQSWFQVENSNLGPEFLPNMCSTNFSTQKHYGNNALIEDLNPTGINYENSGAMEENSSFSSFDESSNSYSMSYDMHTNRRTWGFHEVEDLHSVAFGYSTRTHS 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01513 265 Coils Coil 113 133 - -
Vimu3g01513 265 ProSiteProfiles LOB domain profile. 32 134 IPR004883 -
Vimu3g01513 265 PANTHER LOB DOMAIN CONTAINING PROTEIN 27 220 - -
Vimu3g01513 265 Pfam Lateral organ boundaries (LOB) domain 33 131 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01513 Vimu-Chr3 28483793 28484743 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01513 33 259 AS2 family AT3G58190 49.784 4.34e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu3g01513 LOB 8.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01513 K13945 - gmx:100805623 410.994