Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01512 ATGGCTTCTGCAACAACTGCAAACGATGCTGCTTCTTCTTCCTTTGGATCTCCCTGTGGGGCATGCAAGTTCCTGCGAAGAAAATGTGCCGCAGACTGCATCTTTGCACCCTACTTTTGCTCCGAACAAGGACCTGCTAGATTCGCAACCATTCATAAGGTTTTCGGAGCTAGCAACGTTTCCAAGTTGCTCATGCGTATACCAGATAACGATCGTTTTGAGGCAATGGTCACAATCGCTTACGAAGCCCAAGCTCGCATCAGAGACCCTGTTTACGGTTGTGTCTCCCATATATTCGCCTTGCAACAACAGGTAGCAAGCTTGCAGGCACAGCTAGTGGAAATGAAGGCACTGCTGGATCAGAACCAGATGGTGTACAGAAACATTGAGAATCATTGGTCAGAGAATGTTGGACAAGCATTCAATCCGTTTCGTCCCACTTCCATGAATAACCCTATTTCTCCTCAGAGCTCACTTGACTCAATTGATTACAGCAGCAATAGAAATGATGGAATGAGCCTGCAAGATGCACAAAACGGAGATGATTTCTCATTCCAAGATTGTTCTTGGAAAAGATCATATAGCAATGACTTGGGTGAGCTACAAGAATTGGCACTTAGAATAATGAGAAAGTGTGATTAG 642 0.4486 MASATTANDAASSSFGSPCGACKFLRRKCAADCIFAPYFCSEQGPARFATIHKVFGASNVSKLLMRIPDNDRFEAMVTIAYEAQARIRDPVYGCVSHIFALQQQVASLQAQLVEMKALLDQNQMVYRNIENHWSENVGQAFNPFRPTSMNNPISPQSSLDSIDYSSNRNDGMSLQDAQNGDDFSFQDCSWKRSYSNDLGELQELALRIMRKCD 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01512 213 Coils Coil 98 118 - -
Vimu3g01512 213 PANTHER LOB DOMAIN CONTAINING PROTEIN 14 167 - -
Vimu3g01512 213 Pfam Lateral organ boundaries (LOB) domain 18 116 IPR004883 -
Vimu3g01512 213 ProSiteProfiles LOB domain profile. 17 119 IPR004883 -
Vimu3g01512 213 MobiDBLite consensus disorder prediction 147 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01512 Vimu-Chr3 28430717 28431553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01512 1 210 AS2 family AT2G42430 50.607 2.72e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu3g01512 LOB 9.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01512 K13944 - gmx:100776145 306.605