Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01504 ATGGAATTCACCTGCCAAGAACATTCCAAAACCTCCAGCGACGAAATTGATCGCTCAGCGGAGCACAATGATGAAATTGCCACTGCCAGATCCTACGAGTGTGTCTTTTGTAAGAGAGGCTTCACCACTGCACAGGCTTTAGGTGGACACATGAATATACACAGAAAAGATAGGGCCAACAGGGCCAAACCCACTTTTCCTTCTTCCACTTCAACCAACCTTGATCACACCAATACCTATGCATCAAATCCGACCTACCTTTCAAAAGGGTCTTACTATTCCACTCTTCCTGATTCAGAGCTAGACCTCAATTACAACTACTACCATCACTTATATTTTCCCTCACACGCTTCTCCTGCCAAATCACCTTCACATGTACAATACAGTGACCTTTTCTGTGTAGAGAACCAAAGGGATCCTCACCTTCTGTTTGGACAAGATTGGAGACAAAGGGGTTTGACTTTCTACACCAATCCCCTATGTGTACATGGAAATAAAGACAACATACAAAACAACACTGAAGAGGACGATCTGGATTTGGAGCTTAGACTTGGTCATCATCCTTAA 567 0.4356 MEFTCQEHSKTSSDEIDRSAEHNDEIATARSYECVFCKRGFTTAQALGGHMNIHRKDRANRAKPTFPSSTSTNLDHTNTYASNPTYLSKGSYYSTLPDSELDLNYNYYHHLYFPSHASPAKSPSHVQYSDLFCVENQRDPHLLFGQDWRQRGLTFYTNPLCVHGNKDNIQNNTEEDDLDLELRLGHHP 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01504 188 PANTHER OS07G0101800 PROTEIN 10 187 - -
Vimu3g01504 188 Gene3D Classic Zinc Finger 6 86 - -
Vimu3g01504 188 SUPERFAMILY beta-beta-alpha zinc fingers 30 58 IPR036236 -
Vimu3g01504 188 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Vimu3g01504 188 MobiDBLite consensus disorder prediction 1 22 - -
Vimu3g01504 188 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Vimu3g01504 188 MobiDBLite consensus disorder prediction 60 80 - -
Vimu3g01504 188 Pfam C2H2-type zinc finger 32 56 - -
Vimu3g01504 188 MobiDBLite consensus disorder prediction 63 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01504 Vimu-Chr3 28370718 28371284 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01504 32 118 C2H2 Transcription Factor Family AT5G43540 41.379 1.94e-15 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu3g01504 zf-C2H2_6 1.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01504 - - gmx:102670484 268.085